View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_12 (Length: 434)

Name: NF7814_low_12
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_12
NF7814_low_12
[»] chr2 (2 HSPs)
chr2 (61-416)||(43190799-43191154)
chr2 (18-61)||(43190727-43190770)
[»] chr8 (1 HSPs)
chr8 (75-109)||(30547239-30547273)
[»] chr4 (1 HSPs)
chr4 (72-109)||(10093694-10093731)
[»] chr3 (1 HSPs)
chr3 (72-109)||(21082538-21082575)
[»] chr1 (1 HSPs)
chr1 (72-109)||(44731161-44731198)
[»] chr5 (1 HSPs)
chr5 (58-106)||(18406634-18406682)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 61 - 416
Target Start/End: Original strand, 43190799 - 43191154
Alignment:
Q  61 acaagaaatgatagagagaaacaaagagaaaaataaagttacatcagaacatgggtggtacacggtattgtttcaggataggtagagttcgagaattgag 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43190799 acaagaaatgatagagagaaacaaagagaaaaataaagttacatcagaatatgggtggtacacggtattgtttcaggattggtagagttcgagaattgag 43190898  T
Q  161 ttgggtggtacacatttttatccatttaggataagtcttcaatttcatctaatgcacagtattgaaatggtcagaattacaaacatgttttgactaataa 260  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43190899 ttgggtggtaaacatttttatccatttaggataagtcttcaatttcatctaatgcacagtattgaaatggtcagaattacaaacatgttttgactaataa 43190998  T
Q  261 atatttcatgcaagattaaatgtatctgtatgtacatgagagaaaaattacgataaatatttgtgagaaattttgtcatgtgtcaattgttattgggaga 360  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43190999 atatttcatgcaagattacatgtatctgtatgtacatgagagaaaaattaagataaatatttgtgagaaattttgtcatgtgtcaattgttattgggaga 43191098  T
Q  361 gacttcttcaaacagattgataaatatgagtatttcttgtgggtattaacaacatt 416  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43191099 gacttcttcaaacagattgataaatatgattatttcttgtgggtattaacaacatt 43191154  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 43190727 - 43190770
Alignment:
Q  18 ccaaactcgcaaacaaagtcttaagaaactaaaatagaattata 61  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  43190727 ccaaactcgcaaataaagtcttaagaaactaaaatagaattata 43190770  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 30547239 - 30547273
Alignment:
Q  75 agagaaacaaagagaaaaataaagttacatcagaa 109  Q
    |||||||||||||||||||| ||||||||||||||    
T  30547239 agagaaacaaagagaaaaatcaagttacatcagaa 30547273  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 10093731 - 10093694
Alignment:
Q  72 tagagagaaacaaagagaaaaataaagttacatcagaa 109  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  10093731 tagagagaagcaaagagaaaaatcaagttacatcagaa 10093694  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 21082575 - 21082538
Alignment:
Q  72 tagagagaaacaaagagaaaaataaagttacatcagaa 109  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  21082575 tagagagaaccaaagagaaaaatcaagttacatcagaa 21082538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 44731198 - 44731161
Alignment:
Q  72 tagagagaaacaaagagaaaaataaagttacatcagaa 109  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  44731198 tagagagaagcaaagagaaaaatcaagttacatcagaa 44731161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 18406634 - 18406682
Alignment:
Q  58 tatacaagaaatgatagagagaaacaaagagaaaaataaagttacatca 106  Q
    |||||||| |||| ||||||||||||||||||| ||| || ||||||||    
T  18406634 tatacaaggaatgttagagagaaacaaagagaagaatgaaattacatca 18406682  T

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