View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_13 (Length: 398)

Name: NF7814_low_13
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_13
NF7814_low_13
[»] chr4 (6 HSPs)
chr4 (115-388)||(3746195-3746467)
chr4 (19-56)||(3746099-3746136)
chr4 (305-388)||(13538252-13538336)
chr4 (296-388)||(31351661-31351754)
chr4 (307-346)||(38415494-38415533)
chr4 (307-364)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (297-381)||(1028751-1028836)
chr8 (309-364)||(28300139-28300194)
chr8 (297-341)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (297-384)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (306-387)||(37307687-37307769)
chr7 (305-388)||(9667228-9667312)
chr7 (305-341)||(27227261-27227297)
chr7 (301-363)||(23982068-23982130)
chr7 (306-363)||(24250144-24250201)
chr7 (305-341)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (306-388)||(9737574-9737657)
chr3 (296-341)||(52910376-52910421)
chr3 (305-341)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (296-341)||(37123631-37123676)
chr2 (305-341)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 115 - 388
Target Start/End: Original strand, 3746195 - 3746467
Alignment:
Q  115 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 214  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  215 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 314  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  315 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 388  Q
    ||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 3746099 - 3746136
Alignment:
Q  19 acaaaatcataagtttcttctttttcaaatgatggtga 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3746099 acaaaatcataagtttcttctttttcaaatgatggtga 3746136  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 388  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  296 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 388  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  307 tagtggctagattcaaacacattatgtatggagaaatgga 346  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  307 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 364  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  297 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 381  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  309 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 364  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  297 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 341  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  297 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 384  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  306 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 387  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 388  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaa 341  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  301 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 363  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  306 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 363  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaa 341  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  306 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 388  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  296 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 341  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaa 341  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  296 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 341  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  305 tctagtggctagattcaaacacattatgtatggagaa 341  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

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