View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_14 (Length: 374)
Name: NF7814_low_14
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 46442366 - 46442026
Alignment:
| Q |
16 |
atacaaacattaatcaattttgatgacatgaaagttcatcaaccttgaaacaaataggtgttcaaaagcataaactttattaaatattgatcaagattga |
115 |
Q |
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| T |
46442366 |
atacaaacattaatcaattttgatgacatgaaagttcatcaaccttgaaacaaataggtgttcaaaagcataaactttattaaatattgatcaagattga |
46442267 |
T |
|
| Q |
116 |
tggcaaaaccatactatcgcatctcaatcattaaagtagcaaaaccaaattataagaaaacaacttcaaggaaagttccgagatggcgcagcaggttgaa |
215 |
Q |
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| T |
46442266 |
tggcaaaaccatactatcgcatctcaatcattaaagtaacaaaaccaaattataagaaaacaacttcaaggaaagttccgagatggcgcagcaggttgaa |
46442167 |
T |
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| Q |
216 |
gtggttgcgcaagtggtagcttgcgaatgtattttctaacccaaacactttttccattaatggagaatttcattcttggattatggtcaaggaaatgatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
46442166 |
gtggttgcgcaagtggtagcttgcgaatgtattttctaacccaaacactttttccattaatggagaatttcattcttggattatcgtcaaggaaacgatc |
46442067 |
T |
|
| Q |
316 |
aaccatatctacagcctcacgacgaactacaagacgagcat |
356 |
Q |
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| T |
46442066 |
aaccatatctacagcctcacgacgaactacaagacgagcat |
46442026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 356
Target Start/End: Original strand, 18329566 - 18329696
Alignment:
| Q |
226 |
aagtggtagcttgcgaatgtattttctaacccaaacactttttccattaatggagaatttcattcttggattatggtcaaggaaatgatcaaccatatct |
325 |
Q |
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| T |
18329566 |
aagtggtagcttgcgaatatattttctagcccaaacatgctttccattaatggagaatttcattcttgaattgtagtcaaggaaatgatcaattacatcc |
18329665 |
T |
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| Q |
326 |
acagcctcacgacgaactacaagacgagcat |
356 |
Q |
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| T |
18329666 |
atagcctcaggacgaacaacaagacgagcat |
18329696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 11576052 - 11575931
Alignment:
| Q |
235 |
cttgcgaatgtattttctaacccaaacactttttccattaatggagaatttcattcttggattatggtcaaggaaatgatcaaccatatctacagcctca |
334 |
Q |
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|||| |||| ||||||||| |||||||| ||| |||||||||||||| |||||| |||| |||| ||||| ||||| |||| || ||||| ||| || |
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| T |
11576052 |
cttgggaatatattttctagcccaaacatgtttcccattaatggagaacttcattattggcttatattcaagaaaatggtcaatcacatctatagcttct |
11575953 |
T |
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| Q |
335 |
cgacgaactacaagacgagcat |
356 |
Q |
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| T |
11575952 |
gggcgaaccacaagacgtgcat |
11575931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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