View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_16 (Length: 372)
Name: NF7814_low_16
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 45672971 - 45672625
Alignment:
| Q |
8 |
ttggtgttatcataggaaccatcattgctacacttatcttactttttctcttcataacgttagtacgcggcttcacaaactcgttaagggcagactcatc |
107 |
Q |
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| T |
45672971 |
ttggtgttatcataggaaccatcattgcaacgcttatcttactttttctcttcataacgttaatacgcggcttcacaaactcgttaagggcagactcatc |
45672872 |
T |
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| Q |
108 |
aaaatgtgaaagtgacaaaggtatcaaccctcaacttctcaaaactttcccaatcttactttactctaccatcatcaaacattttaatgaaagtgttgaa |
207 |
Q |
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| T |
45672871 |
aaaatgtgaaagtgacaaaggtatcaaccctcaacttctcaaaactttcccaatcttactttactctaccatcatcaaacattttaatgaaagtattgaa |
45672772 |
T |
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| Q |
208 |
gatcctctacaatgtgctgtttgtctcggtgatttcaacagcaatgacaaagttcgtgtgctacctcaatgtaatcatgtttttcatcctccatgtattg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45672771 |
gatcctctacaatgtgctgtttgtctcggtgatttcaacaacaatgacaaagttcgtgtgctacctcaatgtaatcatgtttttcatcctccatgtattg |
45672672 |
T |
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| Q |
308 |
atgcttggctttcttcgcatgttacttgtcctgtttgtcgaacaaac |
354 |
Q |
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| T |
45672671 |
atgcttggctttcttcacatattacttgtcctgtttgtcgaacaaac |
45672625 |
T |
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