View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_17 (Length: 369)

Name: NF7814_low_17
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_17
NF7814_low_17
[»] chr4 (9 HSPs)
chr4 (136-357)||(5180783-5181000)
chr4 (136-276)||(4844121-4844256)
chr4 (136-276)||(5171419-5171554)
chr4 (136-276)||(5154826-5154960)
chr4 (136-276)||(5194046-5194180)
chr4 (1-55)||(13629549-13629603)
chr4 (4-55)||(37148433-37148484)
chr4 (1-51)||(19514448-19514498)
chr4 (1-51)||(47866607-47866657)
[»] chr3 (6 HSPs)
chr3 (1-55)||(9460583-9460637)
chr3 (1-55)||(43808786-43808840)
chr3 (1-39)||(29134422-29134460)
chr3 (24-71)||(2743205-2743252)
chr3 (1-56)||(50461041-50461096)
chr3 (1-55)||(19468800-19468854)
[»] chr6 (2 HSPs)
chr6 (1-56)||(18332546-18332601)
chr6 (1-55)||(34704051-34704105)
[»] chr2 (2 HSPs)
chr2 (1-56)||(28000669-28000724)
chr2 (1-55)||(41579250-41579304)
[»] chr1 (3 HSPs)
chr1 (1-39)||(51387090-51387128)
chr1 (1-55)||(22370296-22370350)
chr1 (1-55)||(38505953-38506007)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 5180783 - 5181000
Alignment:
Q  136 aagtgaatgaatta-gaagacaattttaatatcccaaagaaaatattaatttgtaacaataataagaaacttcaaataaaatgaaaaagtggttaatgaa 234  Q
    |||||||||||||| |||||||||| ||| ||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||| ||||    
T  5180783 aagtgaatgaattaagaagacaattataagatccccaagaaaatattaatttttaacgataataagaaactttaaataaaatgaaaaactggtta-tgaa 5180881  T
Q  235 tcattggtaggaatcgaaataaattaattaacaaaagctttttatttggaggaaagaaatcggaacaaaaagtgaatgcaatatttgttttcacacttaa 334  Q
    |||||||||||||| |||||    |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  5180882 tcattggtaggaattgaaat----taattaacaaaagcttttcattaggaggaaagaaatcggaataaaaagtgaatgcaatacttgtttgcacacttaa 5180977  T
Q  335 aactaatcatcattgtgtatatt 357  Q
    ||||| |||||||| ||||||||    
T  5180978 aactactcatcattatgtatatt 5181000  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 4844256 - 4844121
Alignment:
Q  136 aagtgaatgaattagaagacaattttaatatcccaaagaaaatattaatttgtaacaataataagaaacttcaaataaaatgaaaaagtggttaatgaat 235  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| || |||||| |||| ||||||||||||||||||||| ||||||    
T  4844256 aagtgaatgaattagaagacaattataaaatcccaaagaaaatattaatttttaacgatgataagagactttaaataaaatgaaaaagtggtt-atgaat 4844158  T
Q  236 cattggtaggaatcgaaataaattaattaacaaaagctttt 276  Q
    ||||||||||||| |    ||||||||||||||||||||||    
T  4844157 cattggtaggaattg----aaattaattaacaaaagctttt 4844121  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 5171419 - 5171554
Alignment:
Q  136 aagtgaatgaattagaagacaattttaatatcccaaagaaaatattaatttgtaacaataataagaaacttcaaataaaatgaaaaagtggttaatgaat 235  Q
    |||||||||||||||||||||||| ||| ||| | |||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||| ||||||    
T  5171419 aagtgaatgaattagaagacaattataagatctcgaagaaaatattaatttttaacgataataagagactttaaataaaatgaaaaactggtt-atgaat 5171517  T
Q  236 cattggtaggaatcgaaataaattaattaacaaaagctttt 276  Q
    ||||||||||||| |    ||||||||||||||||||||||    
T  5171518 cattggtaggaattg----aaattaattaacaaaagctttt 5171554  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 5154826 - 5154960
Alignment:
Q  136 aagtgaatgaattagaagacaattttaatatcccaaagaaaatattaatttgtaacaataataagaaacttcaaataaaatgaaaaagtggttaatgaat 235  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||||||  |||| ||||||||| |||| ||||||||||||||| ||||| || |||    
T  5154826 aagtgaatgaattagaagacaattataagatcccaaa-aaaatattaattattaacgataataagagactttaaataaaatgaaaaactggtt-ataaat 5154923  T
Q  236 cattggtaggaatcgaaataaattaattaacaaaagctttt 276  Q
    ||||||||||||| |    ||||||||||||||||||||||    
T  5154924 cattggtaggaattg----aaattaattaacaaaagctttt 5154960  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 5194046 - 5194180
Alignment:
Q  136 aagtgaatgaattagaagacaattttaatatcccaaagaaaatattaatttgtaacaataataagaaacttcaaataaaatgaaaaagtggttaatgaat 235  Q
    ||||||||||||||||| |||||| ||| ||||| |||||||||| ||||| |||| ||||||||| |||| ||||||||||||||||||||| ||||||    
T  5194046 aagtgaatgaattagaatacaattataagatccccaagaaaatat-aatttttaacgataataagagactttaaataaaatgaaaaagtggtt-atgaat 5194143  T
Q  236 cattggtaggaatcgaaataaattaattaacaaaagctttt 276  Q
    ||| ||||||||| |    ||||||||||||||||||||||    
T  5194144 catcggtaggaattg----aaattaattaacaaaagctttt 5194180  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13629603 - 13629549
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  13629603 gggaaaaattagggttaatggttgcatgacctgataagcatttagaataagggat 13629549  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 37148433 - 37148484
Alignment:
Q  4 aaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    ||||||||||||||||| | |||||||||||||||| ||| || ||||||||    
T  37148433 aaaaattagggttaatgatagcatgacctaataagcatttggagtaagggat 37148484  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19514498 - 19514448
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 51  Q
    ||||||||||||| | || ||||||| ||||| ||||||||||||||||||    
T  19514498 gggaaaaattaggttaaaaggttgcaagaccttataagcttttagaataag 19514448  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47866607 - 47866657
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataag 51  Q
    ||||||||||||| ||| || ||||| |||||||||||| |||||||||||    
T  47866607 gggaaaaattaggtttagtgcttgcaagacctaataagcatttagaataag 47866657  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9460637 - 9460583
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9460637 gggaaaaattagggttaatggttgcatgacctaataagcatttagaataagggat 9460583  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43808786 - 43808840
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| ||||||||    
T  43808786 gggaaaaattagggttaatgatagcatgacctaataagcatttagagtaagggat 43808840  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29134460 - 29134422
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagc 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29134460 gggaaaaattagggttaatggttgcatgatctaataagc 29134422  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 2743205 - 2743252
Alignment:
Q  24 gcatgacctaataagcttttagaataagggattagatataagtatgat 71  Q
    ||||||||||||||||||| ||| |||| ||||||| |||||||||||    
T  2743205 gcatgacctaataagctttaagagtaagtgattagaaataagtatgat 2743252  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50461096 - 50461041
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggatt 56  Q
    ||||||||||||| | |||||||||  |||||||||||| |||||| |||||||||    
T  50461096 gggaaaaattaggttaaatggttgctagacctaataagcatttagagtaagggatt 50461041  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19468854 - 19468800
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    ||||||||||||| ||| || ||||| |||||||||||| |||||| ||||||||    
T  19468854 gggaaaaattaggtttagtgcttgcaagacctaataagcatttagagtaagggat 19468800  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18332546 - 18332601
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggatt 56  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||| |||||    
T  18332546 gggaaaaattagggttaatggttgcatgatttaataagcatttagaataaaggatt 18332601  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34704105 - 34704051
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    ||||||||||||| ||| | || ||| |||||||||||| |||||||||||||||    
T  34704105 gggaaaaattaggtttagtagtagcaagacctaataagcatttagaataagggat 34704051  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28000724 - 28000669
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggatt 56  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||    
T  28000724 gggaaaaattagggttaatgatagcatgacctaacaagcatttagaataagggatt 28000669  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41579304 - 41579250
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    |||||||||||||||||||| | |||||||||||||||| |||||| ||||||||    
T  41579304 gggaaaaattagggttaatgatagcatgacctaataagcatttagagtaagggat 41579250  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 51387090 - 51387128
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51387090 gggaaaaattagggttaatggttgcatgacctaataagc 51387128  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22370350 - 22370296
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    |||||||||||||||||||| | | |||||||||||||| |||||| ||||||||    
T  22370350 gggaaaaattagggttaatgatagtatgacctaataagcatttagagtaagggat 22370296  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38506007 - 38505953
Alignment:
Q  1 gggaaaaattagggttaatggttgcatgacctaataagcttttagaataagggat 55  Q
    ||||||| ||||| | | |||| |||||||||||||||| |||||||||||||||    
T  38506007 gggaaaatttaggttaagtggtagcatgacctaataagcatttagaataagggat 38505953  T

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