View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_18 (Length: 369)
Name: NF7814_low_18
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 42238175 - 42238342
Alignment:
| Q |
13 |
ctatattattctatgataacaaatgttgattgattttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataa |
112 |
Q |
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| T |
42238175 |
ctatataattctatgataacaaatgttgattgaatttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataa |
42238274 |
T |
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| Q |
113 |
cactatgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgtagacataaaag |
180 |
Q |
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| T |
42238275 |
cactatgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgcagacataaaag |
42238342 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 42238401 - 42238505
Alignment:
| Q |
262 |
aaatcattttcttcggatgaatgaaagtttatatgagttggacttcaaatactaccaaagacggattttaaagttcatagatagagcgttaatatagtat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||| |
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| T |
42238401 |
aaatcattttcttcggatgaatgaaagtttatatgagttgaacttcaaatactatcaaagacggattttaaagctcatagatagagcgttaacatggtat |
42238500 |
T |
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| Q |
362 |
ttacc |
366 |
Q |
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||||| |
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| T |
42238501 |
ttacc |
42238505 |
T |
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