View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_20 (Length: 361)
Name: NF7814_low_20
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 355
Target Start/End: Complemental strand, 6407608 - 6407257
Alignment:
| Q |
4 |
atgtagcatgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaac |
103 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
6407608 |
atgtagcataagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagactagaaggttaccgtctcgaacctgctcacgaac |
6407509 |
T |
|
| Q |
104 |
aaagtgataatccatggctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407508 |
aaagtgataatccatggctatatgtttcatttttgaatgtagaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggt |
6407409 |
T |
|
| Q |
204 |
ttctacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcagcagatgcagtggctacaacacggtattcagcctcggttgatgatc |
303 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |
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| T |
6407408 |
ttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcagcagatgtagtggctacagcacggtattcagcctcagttgatgatc |
6407309 |
T |
|
| Q |
304 |
gtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaa |
355 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6407308 |
gtgctacagtacgttgtttttgtgatagccaagaaataggattacctccaaa |
6407257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 40094322 - 40094636
Alignment:
| Q |
4 |
atgtagcatgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaac |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094322 |
atgtagcatgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaac |
40094421 |
T |
|
| Q |
104 |
aaagtgataatccatggctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcacataataatagaggtggt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40094422 |
aaagtgataatccatggctatatgtttcatttttgaatgtagaactgggtttgagcagagacatgtagcacctacattgtcacataataatagaggtggt |
40094521 |
T |
|
| Q |
204 |
ttctacaatggtatatgaagctcttgaagcaaattttgaagccacatgagttcagcagatgcagtggctacaacacggtattcagcctcggttgatgatc |
303 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40094522 |
ttcgacaatggtatatgaagctcttgaagcaaattttgaagccacgtgagttcagcagatgcagtggctacagcacggtattcagcctcggttgatgatc |
40094621 |
T |
|
| Q |
304 |
gtgctacagtacgtt |
318 |
Q |
| |
|
||||||||||||||| |
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|
| T |
40094622 |
gtgctacagtacgtt |
40094636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 2662935 - 2662766
Alignment:
| Q |
21 |
ggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatgg |
120 |
Q |
| |
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|||||||| || |||||||| | |||||||| || || ||||| |||||||| ||||| || || || || || ||||| ||||||||||| |||| || |
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| T |
2662935 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
2662836 |
T |
|
| Q |
121 |
ctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcacataa |
190 |
Q |
| |
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||| ||||||||||| | || |||||||| || ||||| |||||| | ||||||||||| |||||||| |
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| T |
2662835 |
atatgtgtttcattttggagtggagaactggattagagcatagatatatggcacctacattatcacataa |
2662766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 40112935 - 40112976
Alignment:
| Q |
314 |
acgttgttttcgtgatagccaagaaataggattacctccaaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaa |
40112976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 9004524 - 9004626
Alignment:
| Q |
88 |
gaacctgctcacgaacaaagtgataatccatggctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcaca |
187 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||| ||||||||||||| || ||||||||| ||| || || || | ||| ||||| || ||||| ||||| |
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| T |
9004524 |
gaacctgctctcgaacaaaatgatagtccatggatatatgtttcattcttgaatgtagaattggattagaacaaacataggtagctccgacattatcaca |
9004623 |
T |
|
| Q |
188 |
taa |
190 |
Q |
| |
|
||| |
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|
| T |
9004624 |
taa |
9004626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 3020002 - 3019833
Alignment:
| Q |
21 |
ggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatgg |
120 |
Q |
| |
|
|||||||| || |||||||| | |||||||| || || ||||| |||||||| ||||| || || || || || ||||| ||||||||||| |||| || |
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| T |
3020002 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
3019903 |
T |
|
| Q |
121 |
ctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcacataa |
190 |
Q |
| |
|
||| ||||||||||| | || |||||||| || ||||| |||||||| ||||||||||| |||||||| |
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|
| T |
3019902 |
atatgtgtttcattttggagtggagaactggattagagcatagatatgtggcacctacattatcacataa |
3019833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 355
Target Start/End: Complemental strand, 3019778 - 3019668
Alignment:
| Q |
245 |
ccacatgagttcagcagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaatagga |
344 |
Q |
| |
|
|||||| | |||||| | ||| |||||||| | || ||||||||||| || ||||| | || || || |||||||| | ||| ||||||||||||||| |
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|
| T |
3019778 |
ccacataatttcagctgttgctgtggctactgctcgatattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaatagga |
3019679 |
T |
|
| Q |
345 |
ttacctccaaa |
355 |
Q |
| |
|
||||||||||| |
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|
| T |
3019678 |
ttacctccaaa |
3019668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 31347701 - 31347665
Alignment:
| Q |
98 |
acgaacaaagtgataatccatggctatatgtttcatt |
134 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |
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| T |
31347701 |
acgaacaaagtgataatccatggcaatgtgtttcatt |
31347665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 32074296 - 32074256
Alignment:
| Q |
153 |
tttgagcagagatatgtagcacctacattgtcacataataa |
193 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
32074296 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
32074256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 653990 - 654083
Alignment:
| Q |
243 |
agccacatgagttcagcagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaaga |
337 |
Q |
| |
|
||||||| |||||||||| ||||||||| || |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||||| |
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|
| T |
653990 |
agccacactagttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaaga |
654083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 653759 - 653883
Alignment:
| Q |
12 |
tgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgat |
111 |
Q |
| |
|
|||| ||||||||| ||||| || ||||| | || || ||||| || |||||||||||||||| ||| || || |||| || |||| |||||| |||| |
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|
| T |
653759 |
tgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgat |
653858 |
T |
|
| Q |
112 |
aatccatggctatatgtttcatttt |
136 |
Q |
| |
|
| ||||| | |||||| |||||||| |
|
|
| T |
653859 |
agtccatagatatatgcttcatttt |
653883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 1108860 - 1108962
Alignment:
| Q |
88 |
gaacctgctcacgaacaaagtgataatccatggctatatgtttcattttttaatgtagaactgggtttgagcagagatatgtagcacctacattgtcaca |
187 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||| ||||||||||||| || ||||||||| ||| || || || | ||| ||||| || ||||| ||||| |
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|
| T |
1108860 |
gaacctgctctcgaacaaaatgatagtccatggatatatgtttcattcttgaatgtagaattggattagaacaaacataggtagctccaacattatcaca |
1108959 |
T |
|
| Q |
188 |
taa |
190 |
Q |
| |
|
||| |
|
|
| T |
1108960 |
taa |
1108962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 28083284 - 28083324
Alignment:
| Q |
153 |
tttgagcagagatatgtagcacctacattgtcacataataa |
193 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
28083284 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
28083324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 3690402 - 3690493
Alignment:
| Q |
264 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaa |
355 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || ||||||||||| || ||||||||||| | ||| ||||| || ||||||||||| ||||| |
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|
| T |
3690402 |
gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaa |
3690493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 3690291 - 3690331
Alignment:
| Q |
153 |
tttgagcagagatatgtagcacctacattgtcacataataa |
193 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
3690291 |
tttgagcaaagatatgttgcacctacattgtcacacaataa |
3690331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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