View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_21 (Length: 345)
Name: NF7814_low_21
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 40470341 - 40470154
Alignment:
| Q |
1 |
tgtaggaaactttgtacctgaaattgtaaccatctgtaacttttagaaattagcaattttgtccctgaaattataacatgacaatcaaaagatgtatcca |
100 |
Q |
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| T |
40470341 |
tgtaggaaattttgtacctgaaattgtaaccatctgtaacttttacaaattagcaattttgtccctgaaattataacatgacaatcaaaagatttatccg |
40470242 |
T |
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| Q |
101 |
ttaagttcaattgttagagagtatgatacgacacattttatgtggactccacatcaataagttagagtttttattcaaatgactagtg |
188 |
Q |
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| T |
40470241 |
ttaagttcaattgttagagagtatgatacgacacattttatgtggacgccacatcaataagttagagtttttattcaaatgactagtg |
40470154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 40470088 - 40470006
Alignment:
| Q |
263 |
gcagaagttactatagatgtactagtatcaactgtaacgttcgcaagcatgtggagagatcaatagatgatccaaaatcattt |
345 |
Q |
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| T |
40470088 |
gcagaagttactatagatgtactagtatcaactgtaacgttcgcaagcatgtggagagatcaatagatgatccaaaatcattt |
40470006 |
T |
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