View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_22 (Length: 342)

Name: NF7814_low_22
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_22
NF7814_low_22
[»] chr4 (5 HSPs)
chr4 (16-333)||(49272489-49272798)
chr4 (48-195)||(23406518-23406672)
chr4 (194-332)||(52723872-52724007)
chr4 (66-129)||(4848715-4848778)
chr4 (66-129)||(5198927-5198990)
[»] chr1 (4 HSPs)
chr1 (48-333)||(12900713-12901014)
chr1 (193-332)||(46502783-46502922)
chr1 (71-157)||(42048901-42048987)
chr1 (193-333)||(4520704-4520840)
[»] chr7 (3 HSPs)
chr7 (193-332)||(39773357-39773496)
chr7 (191-238)||(29346786-29346833)
chr7 (158-195)||(29346841-29346878)
[»] chr2 (3 HSPs)
chr2 (222-333)||(12324589-12324700)
chr2 (48-146)||(11183882-11183981)
chr2 (158-196)||(19261761-19261799)
[»] chr6 (5 HSPs)
chr6 (48-155)||(30062980-30063087)
chr6 (48-157)||(10086065-10086175)
chr6 (73-152)||(165736-165814)
chr6 (196-289)||(6033315-6033408)
chr6 (48-128)||(6919323-6919404)
[»] scaffold0274 (1 HSPs)
scaffold0274 (193-332)||(5230-5369)
[»] scaffold0271 (1 HSPs)
scaffold0271 (193-332)||(3921-4060)
[»] chr8 (5 HSPs)
chr8 (222-330)||(37263989-37264096)
chr8 (158-195)||(17011644-17011681)
chr8 (158-195)||(17545520-17545557)
chr8 (159-196)||(36316058-36316095)
chr8 (50-113)||(39721339-39721403)
[»] chr5 (2 HSPs)
chr5 (48-128)||(34272244-34272325)
chr5 (59-111)||(15027066-15027118)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 49272489 - 49272798
Alignment:
Q  16 aagcaattgtatcactcaggagagtttcaatgtgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||    
T  49272489 aagcaattgtatcactcaggagagtttcaatgtgttatgattcaaataacacat--------acacttggcaaaatgtaattggttgaggtaaatggaca 49272580  T
Q  116 tgtgattagtgattgtgcataaattgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcttctctccctttgagagtaatgacttaagtttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49272581 tgtgattagtgattgtgcataaattgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcctctctccctttgagagtaatgacttaagtttt 49272680  T
Q  216 tggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaa 315  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49272681 tggactaagtcttcttctatcttcctactagtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaa 49272780  T
Q  316 tacaaagttatttcatct 333  Q
    | ||||| ||||||||||    
T  49272781 tgcaaagctatttcatct 49272798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 23406518 - 23406672
Alignment:
Q  48 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 146  Q
    |||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||    |||||||||| ||||  ||||||    
T  23406518 tgttatgattcaaaatagcacatgagaaaatacacttggaaaaatgtaattggttgagctaaatagacatgtg--gcgtgattgtgcttaaacagggaaa 23406615  T
Q  147 ggatgatcact--------tgaagaaaaatgatgaaagtctctcttctctccctttg 195  Q
    |||||||||||        ||||||||||||||||||||||||| |||||| |||||    
T  23406616 ggatgatcactaagggttatgaagaaaaatgatgaaagtctctcctctctctctttg 23406672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 332
Target Start/End: Complemental strand, 52724007 - 52723872
Alignment:
Q  194 tgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgta 293  Q
    |||||||||||| ||| || |||| || || ||||||||||||||  ||   |||  |||||||||||||||||| | ||||||||| ||||||||||||    
T  52724007 tgagagtaatgatttaggtctttgaactaaatcttcttctatctttttaa--gttcattaagttgtcaatttacattctattcgatcgatttctcttgta 52723910  T
Q  294 ttgtgtttttcattgaattcaatacaaagttatttcatc 332  Q
    || || |||||| ||||||||||||||||||||||||||    
T  52723909 ttttg-ttttcaatgaattcaatacaaagttatttcatc 52723872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 4848715 - 4848778
Alignment:
Q  66 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 129  Q
    |||||||||||||||||||||| ||  ||||||||||| | |||||||||||||  ||||||||    
T  4848715 acatgagaaaatacatttggcataacataattggttgacgcaaatggacatgtggctagtgatt 4848778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 5198990 - 5198927
Alignment:
Q  66 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 129  Q
    ||||||||||||||| | |||| ||  ||||||||||||| |||||||||||||  ||||||||    
T  5198990 acatgagaaaatacactcggcataacataattggttgaggcaaatggacatgtggctagtgatt 5198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 333
Target Start/End: Original strand, 12900713 - 12901014
Alignment:
Q  48 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 146  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||  ||| |||  | |||||||||||||||| ||||||    
T  12900713 tgttatgattcaagatagcacatgagaaaatacacttggcaaaatgtaattggttgagctaaataaacacgtggcttgtgattgtgcataaatagggaaa 12900812  T
Q  147 ggatgatcact--------tgaagaaaaatgatgaaagtctct-cttctctccct-------ttgagagtaatgacttaagtttttggaccaagtcttct 230  Q
     |||||||||         | ||||||||| ||||| |||||| ||||||||  |       |||||||||||| |||| || |||| || |||||||||    
T  12900813 agatgatcaccaagggttatcaagaaaaattatgaa-gtctctacttctctctttactcttcttgagagtaatggcttaggtctttgaactaagtcttct 12900911  T
Q  231 tctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaagttatttca 330  Q
    |||||||| ||||| |||  |||||||||||||||||| |  |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12900912 tctatctttctactagttgattaagttgtcaatttacattccattcaatcactttctcttgtattgtgtttttcattgaattcaatacaaagtcatttca 12901011  T
Q  331 tct 333  Q
    |||    
T  12901012 tct 12901014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 46502783 - 46502922
Alignment:
Q  193 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 292  Q
    |||||||||||| |||| || ||| ||| |||||||||||||| || |||||  ||  |||||||||||||||||| |||||||||||||||||||||||    
T  46502783 ttgagagtaatggcttaggtctttagactaagtcttcttctatttttctactaattcattaagttgtcaatttacattttattcgatcaatttctcttgt 46502882  T
Q  293 attgtgtttttcattgaattcaatacaaagttatttcatc 332  Q
    ||||||||||| | ||||||||||||| || |||||||||    
T  46502883 attgtgttttttagtgaattcaatacagagctatttcatc 46502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 42048901 - 42048987
Alignment:
Q  71 agaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatgatcact 157  Q
    |||||||||| ||||||||||||||||||||||| ||||  ||||||||  | ||||||||||||| || ||||||| |||||||||    
T  42048901 agaaaatacacttggcaaaatgtaattggttgagctaaagagacatgtggctcgtgattgtgcatatatagggaaagtatgatcact 42048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 333
Target Start/End: Original strand, 4520704 - 4520840
Alignment:
Q  193 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 292  Q
    |||||| ||||||||||||| |||| || |||||||||| | |||| ||||| | |||| ||||||| |||||||| | ||||  ||||||||| | |||    
T  4520704 ttgagaataatgacttaagtctttgaactaagtcttcttttgtctttctactag-ttctaaagttgttaatttacattgtatttaatcaatttc-cctgt 4520801  T
Q  293 attgtgtttttcattgaattcaatacaaagttatttcatct 333  Q
    ||||||||||||| ||||||  ||||| |||||||||||||    
T  4520802 attgtgtttttcagtgaatt--atacatagttatttcatct 4520840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 39773357 - 39773496
Alignment:
Q  193 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 292  Q
    |||||||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||  |||| ||||||||||||| | ||||| |||||||||||||||    
T  39773357 ttgagagtaatggcttaggtctttagactaagtcttcttctatctttctactagttcattaaattgtcaatttacattctattcaatcaatttctcttgt 39773456  T
Q  293 attgtgtttttcattgaattcaatacaaagttatttcatc 332  Q
    ||||| ||||| | ||||||||||||||||||||||||||    
T  39773457 attgtattttttagtgaattcaatacaaagttatttcatc 39773496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 29346833 - 29346786
Alignment:
Q  191 ctttgagagtaatgacttaagtttttggaccaagtcttcttctatctt 238  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  29346833 ctttgagggtaatgacttaagtctttggactaagtcttcttctatctt 29346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 29346878 - 29346841
Alignment:
Q  158 tgaagaaaaatgatgaaagtctctcttctctccctttg 195  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  29346878 tgaagaaaaatgatgaaagtctctcctttctccctttg 29346841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 12324589 - 12324700
Alignment:
Q  222 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 321  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||| | |||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  12324589 aagtcttcttctatattcctactagtttcttaagtttacaatttacattgtattcagtcaatttatcttgtattgtgtttttcattaaattcaatacaaa 12324688  T
Q  322 gttatttcatct 333  Q
    ||||||||||||    
T  12324689 gttatttcatct 12324700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 11183882 - 11183981
Alignment:
Q  48 tgttatgattc-aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 146  Q
    ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||  | ||||| ||||||||  |||| ||||||||||||| ||||||    
T  11183882 tgttatgattctaaatagcatatgagaaaatacacttggcaaaatgtaattggtttggataaatagacatgtgtctagttattgtgcataaatagggaaa 11183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 19261799 - 19261761
Alignment:
Q  158 tgaagaaaaatgatgaaagtctctcttctctccctttga 196  Q
    |||||||||||||||||||||| || |||||||||||||    
T  19261799 tgaagaaaaatgatgaaagtctatcctctctccctttga 19261761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 30062980 - 30063087
Alignment:
Q  48 tgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaag 147  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| || |||||||||  ||||||    
T  30062980 tgttgtgattcaaatagcacatgagaaaatacacttggcaaaatgtaattggttgaggtaaatggacatgtggccagtgtttttgcataaatatggaaag 30063079  T
Q  148 gatgatca 155  Q
    ||||||||    
T  30063080 gatgatca 30063087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 10086065 - 10086175
Alignment:
Q  48 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 146  Q
    |||||||||||||| || ||||||||||||||||  | | ||||| |||||||||||| ||||||||||||||  ||||||||||| |||||| ||||||    
T  10086065 tgttatgattcaaaatagcacatgagaaaatacacattgaaaaatataattggttgagataaatggacatgtggctagtgattgtgtataaatagggaaa 10086164  T
Q  147 ggatgatcact 157  Q
    |||||||||||    
T  10086165 ggatgatcact 10086175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 165736 - 165814
Alignment:
Q  73 aaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatga 152  Q
    ||||||||||||| |||||||||||| |||||||||||  ||| |||  ||||||| ||| ||||| |||||||||||||    
T  165736 aaaatacatttggtaaaatgtaattgattgaggtaaataaacacgtggctagtgatcgtgtataaa-tgggaaaggatga 165814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 6033408 - 6033315
Alignment:
Q  196 agagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaa-tttacactttattcgatcaatttctct 289  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||| ||||   |||||||||||||||| ||| || | ||||| ||||||||||||    
T  6033408 agagtaatgattta-gttttaggactaagtcttcttctatctttctacaattttcttaagttgtcaattttgcattgtattccatcaatttctct 6033315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 6919323 - 6919404
Alignment:
Q  48 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 128  Q
    ||||||||||||| ||| || ||| ||||||||| |||||| ||  ||||||||||||| |||||||||||||  |||||||    
T  6919323 tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgat 6919404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 332
Target Start/End: Complemental strand, 5369 - 5230
Alignment:
Q  193 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 291  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  5369 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 5270  T
Q  292 tattgtgtttttcattgaattcaatacaaagttatttcatc 332  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  5269 tattgtgttttt-agtgaattcaatacaaagttatttcatc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 3921 - 4060
Alignment:
Q  193 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 291  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  3921 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 4020  T
Q  292 tattgtgtttttcattgaattcaatacaaagttatttcatc 332  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  4021 tattgtgttttt-agtgaattcaatacaaagttatttcatc 4060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 37263989 - 37264096
Alignment:
Q  222 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 321  Q
    ||||||||||||||||| ||||  |||||||| |||||| |||| |||| ||| | ||||||||||||||||||||||  |||| |||| ||||||||||    
T  37263989 aagtcttcttctatctttctacaagtttctta-gttgtccatttgcactgtatcccatcaatttctcttgtattgtgtaattcagtgaactcaatacaaa 37264087  T
Q  322 gttatttca 330  Q
    |||||||||    
T  37264088 gttatttca 37264096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 17011681 - 17011644
Alignment:
Q  158 tgaagaaaaatgatgaaagtctctcttctctccctttg 195  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17011681 tgaagaaaaatgatgcaagtctctcctctctccctttg 17011644  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 17545520 - 17545557
Alignment:
Q  158 tgaagaaaaatgatgaaagtctctcttctctccctttg 195  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17545520 tgaagaaaaatgatgcaagtctctcctctctccctttg 17545557  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 36316095 - 36316058
Alignment:
Q  159 gaagaaaaatgatgaaagtctctcttctctccctttga 196  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  36316095 gaagaaaaatgatgaaaatctctcctctctccctttga 36316058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 39721403 - 39721339
Alignment:
Q  50 ttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatgga 113  Q
    |||||||||||| || ||||||| |||||||| ||| || ||| |||||||| ||||||||||||    
T  39721403 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtcgaggtaaatgga 39721339  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 34272244 - 34272325
Alignment:
Q  48 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 128  Q
    |||||||||||||| || || |||||||||||||||||||| ||  ||||||||| |||||||||||||||||| |||||||    
T  34272244 tgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgat 34272325  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 15027118 - 15027066
Alignment:
Q  59 aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatg 111  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  15027118 aaataacacatgagaaaatacatttggcataacataattggttgaggtaaatg 15027066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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