View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_26 (Length: 319)
Name: NF7814_low_26
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 43260863 - 43261163
Alignment:
| Q |
1 |
attaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttct |
100 |
Q |
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| T |
43260863 |
attaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttct |
43260962 |
T |
|
| Q |
101 |
agaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43260963 |
agaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgta |
43261062 |
T |
|
| Q |
201 |
gccatgtttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgctagatattgaagtaacta |
300 |
Q |
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| T |
43261063 |
gccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagatattgaagtaacta |
43261162 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
43261163 |
t |
43261163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 43257280 - 43257554
Alignment:
| Q |
8 |
aaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttctagaagac |
107 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
43257280 |
aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaaggatccttttctagaagac |
43257373 |
T |
|
| Q |
108 |
cctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgtagccatgt |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
43257374 |
ccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgtgtagccatgt |
43257473 |
T |
|
| Q |
208 |
ttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgctagata |
288 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43257474 |
ttttcccttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagata |
43257554 |
T |
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