View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_28 (Length: 289)
Name: NF7814_low_28
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 47320175 - 47319948
Alignment:
| Q |
49 |
agatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttctcttcatctttgagtgccgct------tcatcaact |
142 |
Q |
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| T |
47320175 |
agatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttctcttcatctttgagtgccgctgccgcttcatcaact |
47320076 |
T |
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| Q |
143 |
tgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattc |
242 |
Q |
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| T |
47320075 |
tgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgagtc |
47319976 |
T |
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| Q |
243 |
ccaaaagtaaatctttatggtctttaaa |
270 |
Q |
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| T |
47319975 |
ccaaaagtaaatctttatggtctttaaa |
47319948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 47316605 - 47316483
Alignment:
| Q |
149 |
tcatatttcaactctaatccatcatcaccttgttgttc-atcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaa |
247 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||| || |
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| T |
47316605 |
tcatctttcaactctaatccatcatcaccttgttgttctatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaa |
47316506 |
T |
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| Q |
248 |
agtaaatctttatggtctttaaa |
270 |
Q |
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| T |
47316505 |
agtaaatttttatggtctttaaa |
47316483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 47320222 - 47320180
Alignment:
| Q |
23 |
tactgtgaaattgacacataacagatagatcaaactaggaatt |
65 |
Q |
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| T |
47320222 |
tactgtgaaattgacacataacagatagatcaaactaggaatt |
47320180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 47314765 - 47314698
Alignment:
| Q |
188 |
tcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatc |
255 |
Q |
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| T |
47314765 |
tcaccacccaatggaaatgagattttgtgtcccggtggcaagaaagtgttgagtcccaaaagtaaatc |
47314698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 47316662 - 47316597
Alignment:
| Q |
47 |
atagatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttc |
112 |
Q |
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| T |
47316662 |
atagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttc |
47316597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 47307166 - 47307125
Alignment:
| Q |
171 |
catcaccttgttgttcatcaccatccaatggaagtgagattt |
212 |
Q |
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| T |
47307166 |
catcacctcgttgttcatcatcatccaatggaagtgagattt |
47307125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 47311332 - 47311272
Alignment:
| Q |
92 |
tgttattgttcgtcatctttctcttcatctttgagtgccgcttcatcaacttgaagttcat |
152 |
Q |
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| T |
47311332 |
tgttattcttcatcatttttctgctcatctttgagtgccactccatcaccttgaagttcat |
47311272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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