View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_30 (Length: 267)
Name: NF7814_low_30
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 28185196 - 28184959
Alignment:
| Q |
13 |
aatattaccccgtgtttaccacttcgcggtacaatcacagcttccggtgatcttgttccactctcttacattgccggtttattaaccggcagacccaact |
112 |
Q |
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| T |
28185196 |
aatattaccccatgtttaccacttcgcggtacaatcacagcttccggtgatcttgttccactctcttacattgccggtttattaacgggcagacccaact |
28185097 |
T |
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| Q |
113 |
ctaaagccgttggaccgtctggagaaattctcaatgccaaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaagg |
212 |
Q |
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| T |
28185096 |
ctaaagccgttggaccgtctggagaaattctcaatgccaaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaagg |
28184997 |
T |
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| Q |
213 |
tcttgctcttgttaatggaactgctgttggttctggtt |
250 |
Q |
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| T |
28184996 |
tcttgctcttgttaatggaactgctgttggttctggtt |
28184959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 40944235 - 40944460
Alignment:
| Q |
25 |
tgtttaccacttcgcggtacaatcacagcttccggtgatcttgttccactctcttacattgccggtttattaaccggcagacccaactctaaagccgttg |
124 |
Q |
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| T |
40944235 |
tgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagaccaaattccaaagctcatg |
40944334 |
T |
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| Q |
125 |
gaccgtctggagaaattctcaatgccaaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaaggtcttgctcttgt |
224 |
Q |
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| T |
40944335 |
gaccatctggagaaatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaaccaaaagaaggccttgcacttgt |
40944434 |
T |
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| Q |
225 |
taatggaactgctgttggttctggtt |
250 |
Q |
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| T |
40944435 |
taacggaacagctgttggttccggtt |
40944460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 40958200 - 40958425
Alignment:
| Q |
25 |
tgtttaccacttcgcggtacaatcacagcttccggtgatcttgttccactctcttacattgccggtttattaaccggcagacccaactctaaagccgttg |
124 |
Q |
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| T |
40958200 |
tgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaacaggaagaccaaattcaaaagctcatg |
40958299 |
T |
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| Q |
125 |
gaccgtctggagaaattctcaatgccaaggaagcttttcaacttgctggcattggttctgatttctttgaattgcaacctaaggaaggtcttgctcttgt |
224 |
Q |
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| T |
40958300 |
gaccatctggagaaatacttaatgcaaaagaagcttttaaattggctggaatcaatgctgaattcttagaattacaaccaaaagaaggccttgcacttgt |
40958399 |
T |
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| Q |
225 |
taatggaactgctgttggttctggtt |
250 |
Q |
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| T |
40958400 |
taacggaacagcagttggttcaggtt |
40958425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 40549123 - 40549177
Alignment:
| Q |
196 |
ttgcaacctaaggaaggtcttgctcttgttaatggaactgctgttggttctggtt |
250 |
Q |
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| T |
40549123 |
ttgcaacctaaagaaggtcttgcacttgttaatggaactggtgttggtgctggtt |
40549177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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