View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_31 (Length: 259)

Name: NF7814_low_31
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_31
NF7814_low_31
[»] chr2 (2 HSPs)
chr2 (5-228)||(1658759-1658990)
chr2 (219-252)||(1658994-1659027)
[»] chr1 (3 HSPs)
chr1 (5-228)||(47974802-47975033)
chr1 (22-165)||(24765352-24765499)
chr1 (22-107)||(8113866-8113951)
[»] chr8 (4 HSPs)
chr8 (22-252)||(10289689-10289927)
chr8 (1-124)||(43266140-43266263)
chr8 (219-252)||(43265993-43266026)
chr8 (158-212)||(43266046-43266108)
[»] chr5 (3 HSPs)
chr5 (1-228)||(33672241-33672475)
chr5 (22-93)||(35228096-35228167)
chr5 (219-252)||(33672479-33672512)
[»] chr7 (5 HSPs)
chr7 (5-190)||(4968202-4968388)
chr7 (5-98)||(43282774-43282867)
chr7 (22-107)||(37616945-37617030)
chr7 (22-107)||(4554622-4554707)
chr7 (38-99)||(36828825-36828886)
[»] chr3 (6 HSPs)
chr3 (5-190)||(48663784-48663970)
chr3 (5-169)||(28160537-28160701)
chr3 (5-190)||(4100729-4100915)
chr3 (183-228)||(28160683-28160728)
chr3 (219-252)||(28160732-28160765)
chr3 (219-252)||(48663707-48663740)
[»] scaffold0044 (1 HSPs)
scaffold0044 (22-107)||(83062-83147)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 1658759 - 1658990
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1658759 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcccta 1658858  T
Q  105 tttcttcacttcattccatcgtacagagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagt--------tcttctcccaattc 196  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||        ||||||||||||||    
T  1658859 tttcttcacttcattccatcgtacagagaacagccgcttcttctcctcttctcccaattcaatcgtacagcacaaagttcttctcctcttctcccaattc 1658958  T
Q  197 aatcgtacaacactattaggttttcacttcat 228  Q
    ||||||||||||||||||||||||||||||||    
T  1658959 aatcgtacaacactattaggttttcacttcat 1658990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 1658994 - 1659027
Alignment:
Q  219 ttcacttcattccatcatctcttcacttcatctc 252  Q
    |||||||||||||||||||||||| |||||||||    
T  1658994 ttcacttcattccatcatctcttcgcttcatctc 1659027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 47975033 - 47974802
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47975033 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcccta 47974934  T
Q  105 tttcttcacttcattccatcgtacagagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagttctt--------ctcccaattc 196  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||        ||||||||||    
T  47974933 tttcttcacttcattccatcgtatagagaacagccgcttcttctcctcttctcccaattcaatcgtacagcacaaagttcttctcctcttctcccaattc 47974834  T
Q  197 aatcgtacaacactattaggttttcacttcat 228  Q
    ||||||||||||||||||||||||||||||||    
T  47974833 aatcgtacaacactattaggttttcacttcat 47974802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 24765352 - 24765499
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta-tttcttcacttcattc 120  Q
    ||||||||||||   ||||||||  |||| |||||||||||||||||||||| ||||||||||||||||||||| || | ||| ||||||||||||||||    
T  24765352 tttccgggtcgaccaaaaattacgaaattgcccctcacttaagtgacattagtagggttaattttgtaattttccaaaccctattttcttcacttcattc 24765451  T
Q  121 catcgtac-agagaacaaccg---cttcttctcctcttctcccaattca 165  Q
    ||| | || |||| ||| |||   |||||||||||||||||||||||||    
T  24765452 cattgcacaagag-acagccgcttcttcttctcctcttctcccaattca 24765499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 8113866 - 8113951
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctctattt 107  Q
    ||||||| ||||| | |||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  8113866 tttccggatcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 8113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 10289689 - 10289927
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctctatttcttcacttcattcc 121  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10289689 tttccgggtcgaaacaaaattacaaaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccctatttcttcacttcattcc 10289788  T
Q  122 atcgtacagagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagt--------tcttctcccaattcaatcgtacaacactatt 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||        |||||||||||||||||||||||||||||||    
T  10289789 atcgtacagagaacagccgcttcttctcctcttctcccaattcaatcgtacagcacaaagttcttctcctcttctcccaattcaatcgtacaacactatt 10289888  T
Q  214 aggttttcacttcattccatcatctcttcacttcatctc 252  Q
    || | ||||||||||||||||||||||||||||||||||    
T  10289889 agatcttcacttcattccatcatctcttcacttcatctc 10289927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 43266263 - 43266140
Alignment:
Q  1 gagtgggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagc 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43266263 gagtgggtctaacgcggcgcgttttcgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagc 43266164  T
Q  101 tctatttcttcacttcattccatc 124  Q
     |||||||||||||||||||||||    
T  43266163 cctatttcttcacttcattccatc 43266140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 43266026 - 43265993
Alignment:
Q  219 ttcacttcattccatcatctcttcacttcatctc 252  Q
    ||||||||||||||||||||||||||||||||||    
T  43266026 ttcacttcattccatcatctcttcacttcatctc 43265993  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 43266108 - 43266046
Alignment:
Q  158 ccaattcaatcgcacatcacaaagttctt--------ctcccaattcaatcgtacaacactat 212  Q
    |||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||    
T  43266108 ccaattcaatcgtacatcacaaagttcttctcctcttctcccaattcaatcgtacaacactat 43266046  T

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Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33672241 - 33672475
Alignment:
Q  1 gagtgggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagc 100  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33672241 gagtgggtctaacgcggcgcgtttccgggttgaagcgaaattacataattacccctcact-aagtgacattagaagggttaattttgtaattttcaaagc 33672339  T
Q  101 tctatttcttcacttcattccatcgtacagagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagt--------tcttctccca 192  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||        ||||||||||    
T  33672340 cctatttcttcacttcattccatcgtacagagaacagccgcttcttctcctcttctcccaattcaatcgtacaacacaaagtttttctcctcttctccca 33672439  T
Q  193 attcaatcgtacaacactattaggttttcacttcat 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  33672440 attcaatcgtacaacactattaggttttcacttcat 33672475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 35228167 - 35228096
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattt 93  Q
    ||||||||||||| | ||||||| |||||| |||||||||| || || ||||||||||||||||||| ||||    
T  35228167 tttccgggtcgaaacgaaattacggaattatccctcacttatgtaacgttagaagggttaattttgtcattt 35228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 33672479 - 33672512
Alignment:
Q  219 ttcacttcattccatcatctcttcacttcatctc 252  Q
    ||||||||||||||||||||||||||||||||||    
T  33672479 ttcacttcattccatcatctcttcacttcatctc 33672512  T

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Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 4968202 - 4968388
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  4968202 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaacccta 4968301  T
Q  105 tttcttcacttcattccatcgtac-agagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagttcttctcc 190  Q
    |||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||| | | ||||||||||||||||    
T  4968302 tttcttcacttcattccatcgtacaacagaacagccgcttcttctcttcttctcccaattcaatcgtaaaacacaaagttcttctcc 4968388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 43282774 - 43282867
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaa 98  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43282774 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 37616945 - 37617030
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctctattt 107  Q
    ||||||||||||| | |||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  37616945 tttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 37617030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 4554707 - 4554622
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctctattt 107  Q
    ||||||| ||||| | ||||||  |||||| ||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  4554707 tttccggttcgaaacgaaattatggaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 4554622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 36828886 - 36828825
Alignment:
Q  38 aaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaag 99  Q
    |||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||    
T  36828886 aaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaag 36828825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 48663970 - 48663784
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  48663970 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaacccta 48663871  T
Q  105 tttcttcacttcattccatcgtac-agagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagttcttctcc 190  Q
    |||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||| | | ||||||||||||||||    
T  48663870 tttcttcacttcattccatcgtacaacagaacagccgcttcttctcttcttctcccaattcaatcgtaaaacacaaagttcttctcc 48663784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 28160537 - 28160701
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  28160537 gggtctagcgcggcacgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaaggttaattttgtaattttcaaagcccta 28160636  T
Q  105 tttcttcacttcattccatcgtacagagaacaaccgcttcttctcctcttctcccaattcaatcg 169  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28160637 tttcttcacttcattccatcgtacagagaacagccgcttcttttcctcttctcccaattcaatcg 28160701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 4100729 - 4100915
Alignment:
Q  5 gggtctaacgcggcgcgtttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctcta 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||    
T  4100729 gggtctaacgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaggtttaattttgtaattttcaaaacccta 4100828  T
Q  105 tttcttcacttcattccatcgtac-agagaacaaccgcttcttctcctcttctcccaattcaatcgcacatcacaaagttcttctcc 190  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||| ||||||||||||||||||| | | ||||||||||||||||    
T  4100829 tttcttcacttcattccatcgtacaacagaacagccgcttctgctcttcttctcccaattcaatcgtaaaacacaaagttcttctcc 4100915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 28160683 - 28160728
Alignment:
Q  183 tcttctcccaattcaatcgtacaacactattaggttttcacttcat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28160683 tcttctcccaattcaatcgtacaacactattaggttttcacttcat 28160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 28160732 - 28160765
Alignment:
Q  219 ttcacttcattccatcatctcttcacttcatctc 252  Q
    ||||||||||||||||||||||||||||||||||    
T  28160732 ttcacttcattccatcatctcttcacttcatctc 28160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 48663740 - 48663707
Alignment:
Q  219 ttcacttcattccatcatctcttcacttcatctc 252  Q
    ||||||||||||||||||||||||||||||||||    
T  48663740 ttcacttcattccatcatctcttcacttcatctc 48663707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 83062 - 83147
Alignment:
Q  22 tttccgggtcgaagcaaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagctctattt 107  Q
    ||||||||||||| | |||| ||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||| | ||||||    
T  83062 tttccgggtcgaaacgaaataacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaaaccctattt 83147  T

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