View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_33 (Length: 255)

Name: NF7814_low_33
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_33
NF7814_low_33
[»] chr5 (7 HSPs)
chr5 (1-234)||(16087922-16088155)
chr5 (63-234)||(16085061-16085232)
chr5 (122-232)||(3627797-3627903)
chr5 (96-172)||(14837106-14837181)
chr5 (79-143)||(3627780-3627845)
chr5 (195-236)||(3640934-3640975)
chr5 (206-236)||(14837182-14837212)
[»] chr1 (2 HSPs)
chr1 (62-236)||(19033617-19033791)
chr1 (119-236)||(38968543-38968659)
[»] chr4 (3 HSPs)
chr4 (24-236)||(14059041-14059255)
chr4 (61-236)||(23544678-23544850)
chr4 (151-232)||(22462427-22462508)
[»] chr2 (4 HSPs)
chr2 (47-236)||(7504925-7505115)
chr2 (55-236)||(26973292-26973474)
chr2 (63-236)||(26968772-26968946)
chr2 (152-236)||(17364670-17364751)
[»] chr8 (4 HSPs)
chr8 (24-192)||(5659718-5659887)
chr8 (24-236)||(38643570-38643773)
chr8 (63-236)||(8263478-8263647)
chr8 (78-193)||(21419002-21419118)
[»] chr3 (3 HSPs)
chr3 (47-236)||(53731143-53731329)
chr3 (63-236)||(53726677-53726847)
chr3 (164-236)||(42872048-42872120)
[»] chr6 (1 HSPs)
chr6 (96-236)||(19229541-19229678)
[»] chr7 (1 HSPs)
chr7 (148-236)||(47204923-47205011)
[»] scaffold0427 (2 HSPs)
scaffold0427 (119-214)||(5812-5906)
scaffold0427 (24-143)||(5856-5968)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 16087922 - 16088155
Alignment:
Q  1 ggacaccttgtagaagaaggtctttaacttgcggttacagttacacggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16087922 ggacaccttgtagaagaaggtctttaacttgcggttacagttacagggataaattccaagattgttgtacctgatgcgtaaacagtaaccgcaacaccgc 16088021  T
Q  101 aacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16088022 aacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagt 16088121  T
Q  201 aaacctgcaaaattgaacacgttagtattaacct 234  Q
    ||||||||||||||||||||||||||||||||||    
T  16088122 aaacctgcaaaattgaacacgttagtattaacct 16088155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 16085061 - 16085232
Alignment:
Q  63 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgag 162  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  16085061 tgttgtacctgatgcgtaaacagtaaccgcaacaccacaacttcaaataataatcggcaaccgcatcttcaaataacaacgcagccaccgcaatttcgag 16085160  T
Q  163 taacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacct 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16085161 taacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaacattgaacacgttagtattaacct 16085232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 3627797 - 3627903
Alignment:
Q  122 accgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacg 221  Q
    |||||| ||| |||||| |||| ||| ||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||| |||||    ||||    
T  3627797 accgcaactttaaataataacgtagcaaccgcaacttcaaataacaacgaaccaaattctgcaaaacaaactagaaagtaaacctgtaaaat----cacg 3627892  T
Q  222 ttagtattaac 232  Q
    |||||||||||    
T  3627893 ttagtattaac 3627903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 14837106 - 14837181
Alignment:
Q  96 accgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaa 172  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||  ||||||||| ||||||||||    
T  14837106 accgcaactt-aaataataaccggcaaccgcaacttcaaataacaactcagtcactacaacttcgaataacaacaaa 14837181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 3627780 - 3627845
Alignment:
Q  79 taaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacg 143  Q
    ||||| ||||||||||||||||||||| ||||||||||   ||||||||| |||||||||||||||    
T  3627780 taaacagtaaccgcaacaccgcaactttaaataataacgtagcaaccgcaacttcaaataacaacg 3627845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 3640975 - 3640934
Alignment:
Q  195 gaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  3640975 gaaagtaaacctgcaagattgaacacgttagtattaacctga 3640934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 14837182 - 14837212
Alignment:
Q  206 tgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||||||||||||||||||||||    
T  14837182 tgcaaaattgaacacgttagtattaacctga 14837212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 19033617 - 19033791
Alignment:
Q  62 ttgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 161  Q
    |||||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19033617 ttgttgtacctgatgcgtaaacagtaaccgcaacacgacaactttaaataatatccggcaaccgcaacttcaaataacaacgcagccaccgcaacttcga 19033716  T
Q  162 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19033717 gtaacaacgaaccagattctgcaaaacaaactagacagtaaacctgcaaaattgaacacgttagtattaacctga 19033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 38968659 - 38968543
Alignment:
Q  119 gcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaac 218  Q
    ||||| ||| ||||||||||| ||  ||| ||||||||||| | ||||||| |||| |||||||||| |  ||||||||||||||||||| |||||||||    
T  38968659 gcaacagcaacttcaaataactacaaagcaaccgcaacttcaaataacaacgaaccggattctgcaagattaactagaaagtaaacctgc-aaattgaac 38968561  T
Q  219 acgttagtattaacctga 236  Q
    | ||||||||||||||||    
T  38968560 atgttagtattaacctga 38968543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 14059255 - 14059041
Alignment:
Q  24 ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggca 121  Q
    |||||||||||| ||||||| |  |||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||| || ||||||| | |||    
T  14059255 ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctgatgtgtaaacagcaaccacaacaccgcaactttaagtaataacgcagca 14059156  T
Q  122 accgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacg 221  Q
    |||||| |||| ||||||| ||||| || ||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||    
T  14059155 accgcaacttcgaataacatcgcagtcatcgcaacttcaaataacaacgaaccagattctgcaaaacaaactacaaagtaaacctgcaaaattgaatgcg 14059056  T
Q  222 ttagtattaacctga 236  Q
    |||||||||||||||    
T  14059055 ttagtattaacctga 14059041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 23544850 - 23544678
Alignment:
Q  61 attgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttc 159  Q
    |||||||||||| ||| ||||||   ||||||||||||||||||| |  ||||||| | ||||||||| |||| || |||| | |||||||| |||||||    
T  23544850 attgttgtaccttatgtgtaaacatcaaccgcaacaccgcaactttaggtaataacgcagcaaccgcaacttcgaacaacaccccagccaccacaacttc 23544751  T
Q  160 gagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
     | ||||| | |||| |||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||    
T  23544750 aaataacaccgaacctgattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacctga 23544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 22462508 - 22462427
Alignment:
Q  151 cgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaac 232  Q
    ||||||||| | ||||||  ||||||||||| ||| || ||| ||||||||||| || ||||||||| ||||||||||||||    
T  22462508 cgcaacttcaaataacaatgaaccagattctacaagacgaaccagaaagtaaacttgtaaaattgaatacgttagtattaac 22462427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 7504925 - 7505115
Alignment:
Q  47 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 145  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||| || ||||||| | ||||||||| |||| ||||||| ||||    
T  7504925 ggataaattctaagattgttgtacctgatgtgtaaacagcaaccataacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgca 7505024  T
Q  146 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  7505025 gccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctga 7505115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 26973292 - 26973474
Alignment:
Q  55 tccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgc 153  Q
    ||||||||| |||||||||||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||| ||||||| ||||||||||||    
T  26973292 tccaagattcttgtacctgatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgcagccaccgc 26973391  T
Q  154 aacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26973392 aacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctga 26973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 26968772 - 26968946
Alignment:
Q  63 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 161  Q
    |||||||||||||| |||||| | ||||||||||||||||||| || ||| ||  | ||||||||| |||  |||||||  |||||||||| |||||| |    
T  26968772 tgttgtacctgatgagtaaacagcaaccgcaacaccgcaactttaagtaacaatgcagcaaccgcaactttgaataacacagcagccaccggaacttcaa 26968871  T
Q  162 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
     ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  26968872 ataacaccgaaccatattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgtgttagtattaacctga 26968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 17364670 - 17364751
Alignment:
Q  152 gcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||| | ||||||| ||||||||||||||   | ||||||||||||||| |||||||||| | ||||| ||||||| ||||    
T  17364670 gcaacttcaaataacaacgaaccagattctgca---cgaactagaaagtaaacttgcaaaattggaaacgttggtattaaactga 17364751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 5659887 - 5659718
Alignment:
Q  24 ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaa 122  Q
    |||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  5659887 ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctgatgcgtaaacagcaaccgcaacaccgcaacttcaaataataacaggcaa 5659788  T
Q  123 ccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaac 192  Q
    ||||| ||||||||||||||| ||||||| |||||||||  |||||| |||||| |||||||||||||||    
T  5659787 ccgcaacttcaaataacaacgtagccaccccaacttcgaaaaacaacgaaccagtttctgcaaaacaaac 5659718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 38643570 - 38643773
Alignment:
Q  24 ttaacttgcggttacagtt--acacggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggc 120  Q
    |||||||||||| ||||||  | | ||||||||||||||||||||||||   |||||||||| | ||||||||||||||||||| || ||||||| | ||    
T  38643570 ttaacttgcggtcacagttttaaaaggataaattccaagattgttgtac---atgcgtaaaccgcaaccgcaacaccgcaactttaagtaataacgcagc 38643666  T
Q  121 aaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacac 220  Q
    ||||||| |||| |||||||         |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  |    
T  38643667 aaccgcaacttcgaataaca---------ccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgc 38643757  T
Q  221 gttagtattaacctga 236  Q
    ||||||||||||||||    
T  38643758 gttagtattaacctga 38643773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 8263647 - 8263478
Alignment:
Q  63 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 161  Q
    |||||||||||||| ||||||   |||||||||| |||||||| || ||||||| | ||||||||| |||| ||||| | ||| | |||||||||||| |    
T  8263647 tgttgtacctgatgtgtaaacaacaaccgcaacatcgcaactttaagtaataacgcagcaaccgcaacttcgaataa-accgcggtcaccgcaacttcaa 8263549  T
Q  162 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
     ||||| | |||||||||||||||||||||||||||||||||| || |||||    |||||||||||||||||||    
T  8263548 ataacaccgaaccagattctgcaaaacaaactagaaagtaaacatgtaaaat----cacgttagtattaacctga 8263478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 21419002 - 21419118
Alignment:
Q  78 gtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccag 176  Q
    |||||| | |||||||||||| |||||| |||||||||| |  ||| | || |||| ||||||||||||||| |||||||||| | ||||||| ||||||    
T  21419002 gtaaacagcaaccgcaacaccacaactttaaataataacgcaacaatcacaacttccaataacaacgcagccgccgcaacttcaaataacaacgaaccag 21419101  T
Q  177 attctgcaaaacaaact 193  Q
    |||| ||||||||||||    
T  21419102 attccgcaaaacaaact 21419118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 53731143 - 53731329
Alignment:
Q  47 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 145  Q
    |||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||  || |||| ||||    
T  53731143 ggataaattccaagattgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgca 53731242  T
Q  146 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||||| | |||||   |||| |||||||||||||||||||||||| ||||||| |||||    |||||||||||||||||||    
T  53731243 gccaccgcaacttcaaataacacggaacctgattctgcaaaacaaactagaaaggaaacctgtaaaat----cacgttagtattaacctga 53731329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 53726677 - 53726847
Alignment:
Q  63 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 161  Q
    |||||||||| ||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||  || |||| |||| ||||||||||||| |    
T  53726677 tgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgcaaccaccgcaacttcaa 53726776  T
Q  162 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
     |||||   |||| ||||||||||||||||||||||| |||||||| ||||||    ||||||||||||||||||    
T  53726777 ataacacggaacctgattctgcaaaacaaactagaaattaaacctgtaaaatt----acgttagtattaacctga 53726847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 42872120 - 42872048
Alignment:
Q  164 aacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||||||||| | | | ||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  42872120 aacaacaaaccagattctacgagataaattagaaagtaaacctgtaaaattgaatacgttagtattaacctga 42872048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 19229541 - 19229678
Alignment:
Q  96 accgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaacta 194  Q
    |||||||||| || ||||||| | ||||||||| |||| || ||||  ||||||||||||||||| | ||||| | ||||||||||||||||||||||||    
T  19229541 accgcaactttaagtaataacgcagcaaccgcaacttcgaagaacactgcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaacta 19229640  T
Q  195 gaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    ||||||||||||| |||||    |||||||||||||||||||    
T  19229641 gaaagtaaacctgtaaaat----cacgttagtattaacctga 19229678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 47205011 - 47204923
Alignment:
Q  148 caccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctga 236  Q
    |||||||||||| | ||||| | || |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  47205011 caccgcaacttcaaataacatcgaatcagattctgcaaaacaaactagaaagtaaatctgcaaaattgaatacgttagtattaacctga 47204923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 5906 - 5812
Alignment:
Q  119 gcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaatt 214  Q
    ||||||||| |||||||||| ||| | || ||||||||||| | ||||||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  5906 gcaaccgcaacttcaaataataac-cggcaaccgcaacttcaaataacaacgaactagattctgcaaaacaaactagaaattaaacctgcaaaatt 5812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 5968 - 5856
Alignment:
Q  24 ttaacttgcggttacagttacac-ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaa 122  Q
    |||||||||||| ||||||| |  |||||||||||||||||||||||||| ||| |||||| | |||||||||        |||||||||||||||||||    
T  5968 ttaacttgcggtcacagttataaaggataaattccaagattgttgtacctaatgtgtaaacagcaaccgcaac--------ttcaaataataaccggcaa 5877  T
Q  123 ccgcatcttcaaataacaacg 143  Q
    ||||| |||||||||||||||    
T  5876 ccgcaacttcaaataacaacg 5856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University