View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_35 (Length: 250)
Name: NF7814_low_35
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 52244466 - 52244233
Alignment:
| Q |
1 |
ccccaatgaagctttcgtaaacacactgacaggaaaatgaaaaacttgacatttgacaataagcatccgctgatgttattaatnnnnnnnnatcccagag |
100 |
Q |
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| T |
52244466 |
ccccaatgaagctttcgtaaacacactgacaggaaaatgaaaaacttgacatttgaaaataagcatccgctgatgttattaatggggg---atcccagag |
52244370 |
T |
|
| Q |
101 |
aggttcttcaattgactcagctagggtttttaatctttcgcctttatgcaattattcctgattatgatatctgaatatattcggtatcaatacattctgg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52244369 |
agattcttcaattgactcagctagggtttttaatctttcgcctttatgcaattattcctgattatgatatctgaatatattcggtatcaatacattctgg |
52244270 |
T |
|
| Q |
201 |
ttattgctttaagctctgcagcctatttctatgatttt |
238 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
52244269 |
ttattgc-ttaagctctgcagcctatttctatgatttt |
52244233 |
T |
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