View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7814_low_36 (Length: 249)

Name: NF7814_low_36
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7814_low_36
NF7814_low_36
[»] chr5 (5 HSPs)
chr5 (13-248)||(33807962-33808195)
chr5 (13-248)||(33811616-33811849)
chr5 (13-248)||(33816534-33816767)
chr5 (88-183)||(16698504-16698601)
chr5 (88-183)||(22763905-22764002)
[»] chr3 (10 HSPs)
chr3 (13-247)||(50603148-50603384)
chr3 (16-183)||(39298736-39298908)
chr3 (16-183)||(54967301-54967477)
chr3 (69-185)||(18556392-18556511)
chr3 (69-183)||(44782615-44782733)
chr3 (69-183)||(54979933-54980051)
chr3 (25-114)||(31725346-31725433)
chr3 (88-187)||(17645800-17645897)
chr3 (201-248)||(44782542-44782587)
chr3 (201-248)||(54967228-54967273)
[»] chr6 (4 HSPs)
chr6 (13-248)||(31151944-31152180)
chr6 (69-183)||(22981504-22981621)
chr6 (69-183)||(23806787-23806904)
chr6 (45-190)||(1111378-1111524)
[»] chr1 (2 HSPs)
chr1 (51-248)||(29706872-29707069)
chr1 (91-183)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (11-248)||(26516-26757)
[»] scaffold0479 (1 HSPs)
scaffold0479 (69-183)||(2727-2845)
[»] chr7 (10 HSPs)
chr7 (69-185)||(13465046-13465165)
chr7 (16-248)||(25857149-25857395)
chr7 (16-183)||(4835664-4835840)
chr7 (69-248)||(4842666-4842857)
chr7 (88-183)||(27341025-27341120)
chr7 (13-175)||(8252686-8252846)
chr7 (71-192)||(17845847-17845969)
chr7 (69-183)||(24379370-24379487)
chr7 (117-183)||(38994151-38994218)
chr7 (196-248)||(24379297-24379347)
[»] chr8 (5 HSPs)
chr8 (16-183)||(41481548-41481724)
chr8 (16-248)||(36167547-36167795)
chr8 (72-183)||(18951211-18951326)
chr8 (178-227)||(31206636-31206685)
chr8 (201-248)||(41481752-41481797)
[»] chr4 (4 HSPs)
chr4 (88-185)||(37286972-37287069)
chr4 (16-183)||(9757303-9757480)
chr4 (71-183)||(42682924-42683038)
chr4 (201-248)||(9757230-9757275)
[»] chr2 (1 HSPs)
chr2 (88-181)||(37037942-37038035)
[»] scaffold0003 (1 HSPs)
scaffold0003 (88-183)||(342306-342404)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33807962 - 33808195
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807962 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33808061  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33808062 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33808159  T
Q  213 aagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33808160 aagtgcctattttgagttcacggaggagggaaatta 33808195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33811616 - 33811849
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811616 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33811715  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33811716 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33811813  T
Q  213 aagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33811814 aagtgcctattttgagttcacggaggagggaaatta 33811849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 33816534 - 33816767
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816534 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 33816633  T
Q  113 gagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgcta 212  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  33816634 gagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgcta 33816731  T
Q  213 aagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33816732 aagtgcctattttgagttcacggaggagggaaatta 33816767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 50603148 - 50603384
Alignment:
Q  13 aatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatag 110  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  50603148 aatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatag 50603247  T
Q  111 tggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgc 210  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  50603248 tggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcattttacgttttcgc 50603347  T
Q  211 taaagtgcctattttaagttcacggaggagggaaatt 247  Q
    ||||||| ||||||| |||||||||||||| ||||||    
T  50603348 taaagtgtctattttgagttcacggaggagagaaatt 50603384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  110 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 54967477 - 54967301
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  110 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| |||||||||||||||||||||||||||    
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaatt 54967301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 165  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  166 gttttccacgctaaaatttt 185  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 44782733 - 44782615
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 164  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  165 ggttttccacgctaaaatt 183  Q
    |||||||||||||||||||    
T  44782633 ggttttccacgctaaaatt 44782615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 164  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  165 ggttttccacgctaaaatt 183  Q
    ||||||||| |||||||||    
T  54979951 ggttttccatgctaaaatt 54979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 31725433 - 31725346
Alignment:
Q  25 caatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtgga 114  Q
    |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| ||||    
T  31725433 caatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttatattgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 187  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 44782587 - 44782542
Alignment:
Q  201 acgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||| ||||||| ||||||||||||||||||||||    
T  44782587 acgtttccgcta--gtgtctattttgagttcacggaggagggaaatta 44782542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 54967273 - 54967228
Alignment:
Q  201 acgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||||||||||| |||| |||||||||||||||||    
T  54967273 acgtttccgcta--gtgcctattttgagttgacggaggagggaaatta 54967228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 31152180 - 31151944
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtg 112  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31152180 aatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattcccattattattatagtg 31152081  T
Q  113 gagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgct 211  Q
    |||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  31152080 gagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtcattttatgtttccgct 31151981  T
Q  212 aaagtgcctattttaagttcacggaggagggaaatta 248  Q
    |||||||||||||| ||||||  ||||||||||||||    
T  31151980 aaagtgcctattttgagttcagagaggagggaaatta 31151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 22981504 - 22981621
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 165  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  166 gttttccacgctaaaatt 183  Q
    ||||||||||||||||||    
T  22981604 gttttccacgctaaaatt 22981621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 23806904 - 23806787
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 165  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  166 gttttccacgctaaaatt 183  Q
    ||||||||||||||||||    
T  23806804 gttttccacgctaaaatt 23806787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 1111524 - 1111378
Alignment:
Q  45 tacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtgg-agatttaagaggcttacgggtcccgtggtt 143  Q
    |||||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||||||  | | ||||||||||| |||| | ||||| || ||    
T  1111524 tacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattattattattatagtagatttaagagacttatgagtcccatgatt 1111425  T
Q  144 tttccttactcacattgagaaggttttccacgctaaaattttgttgt 190  Q
    |||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111424 tttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 29707069 - 29706872
Alignment:
Q  51 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 150  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  151 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||| ||| |||||||    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaatta 29706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  91 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 26757 - 26516
Alignment:
Q  11 agaatatagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattatta 104  Q
    |||| |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |    
T  26757 agaaaatagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatca 26658  T
Q  105 ttatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgt 204  Q
    ||| ||||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||| |||||||||    
T  26657 ttagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgt 26560  T
Q  205 ttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    || |||||||||| ||||||| |||||||| |||||||| ||||    
T  26559 tttcgctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 2727 - 2845
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 164  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  165 ggttttccacgctaaaatt 183  Q
    |||||||||||||||||||    
T  2827 ggttttccacgctaaaatt 2845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 165  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  166 gttttccacgctaaaatttt 185  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 25857395 - 25857149
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a 196  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  197 ttttacgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaatta 25857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 4835840 - 4835664
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaatt 4835664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 4842857 - 4842666
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 164  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  165 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||||||||||| ||||||||||||||||||||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgct--agtgcctattttgagttcacggaggagggaaatta 4842666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 8252846 - 8252686
Alignment:
Q  13 aatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccattattattat 108  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||||||||     
T  8252846 aatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgttattattac 8252747  T
Q  109 agtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 175  Q
    | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252746 attgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  71 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 169  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  170 tccacgctaaaattttgttgtgt 192  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  69 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 165  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  166 gttttccacgctaaaatt 183  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  117 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 24379347 - 24379297
Alignment:
Q  196 attttacgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||| |||  |||||||||||||||||||||||||| |||||||    
T  24379347 attttacgtttccacta--gtgcctattttaagttcacggaggagagaaatta 24379297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 41481548 - 41481724
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| |||||||||||||||||||||||||||    
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaatt 41481724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 36167547 - 36167795
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  110 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 195  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  196 attttacgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    |||| |||||||||||  |||||||||||| ||||||||||||||||||||||    
T  36167745 atttcacgtttccgct--agtgcctattttgagttcacggaggagggaaatta 36167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 18951326 - 18951211
Alignment:
Q  72 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 167  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  168 tttccacgctaaaatt 183  Q
    |||||| |||||||||    
T  18951226 tttccatgctaaaatt 18951211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 31206636 - 31206685
Alignment:
Q  178 aaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttaa 227  Q
    |||||||||||| ||||||||||||||||||| | |||||  ||||||||    
T  31206636 aaaattttgttgggtgtcattttacgtttccgtttaagtgtttattttaa 31206685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 41481752 - 41481797
Alignment:
Q  201 acgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||| ||||||| ||||||||||||||||||||||    
T  41481752 acgtttccgcta--gtgtctattttgagttcacggaggagggaaatta 41481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 185  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 9757480 - 9757303
Alignment:
Q  16 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 109  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  110 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 183  Q
    |||||     ||||||||||  | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaatt 9757303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  71 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 168  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  169 ttccacgctaaaatt 183  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 9757275 - 9757230
Alignment:
Q  201 acgtttccgctaaagtgcctattttaagttcacggaggagggaaatta 248  Q
    ||||||||||||  ||||||||||| ||||||||||||| ||||||||    
T  9757275 acgtttccgcta--gtgcctattttgagttcacggaggaaggaaatta 9757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  88 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 181  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 342404 - 342306
Alignment:
Q  88 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaatt 183  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||    
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt 342306  T

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