View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_39 (Length: 242)
Name: NF7814_low_39
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33627749 - 33627511
Alignment:
| Q |
1 |
aggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttga |
100 |
Q |
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| T |
33627749 |
aggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttga |
33627650 |
T |
|
| Q |
101 |
tccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627649 |
tccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtga |
33627550 |
T |
|
| Q |
201 |
ttttgcaatttttgttgacctaataagttcttctcactc |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
33627549 |
ttttgcaatttttgttgacctaataagttcttctaactc |
33627511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 33609293 - 33609121
Alignment:
| Q |
67 |
aagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttt |
166 |
Q |
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| T |
33609293 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatactcccttt |
33609194 |
T |
|
| Q |
167 |
tgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttcttctcactc |
239 |
Q |
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| T |
33609193 |
ttaatatggttttaaagggctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactc |
33609121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 33618522 - 33618295
Alignment:
| Q |
13 |
ccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaactt |
112 |
Q |
| |
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||||||||||| || |||||||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | ||| ||||||||||||| | |
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| T |
33618522 |
ccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagct |
33618423 |
T |
|
| Q |
113 |
gttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtgattttgcaatttt |
212 |
Q |
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|||| |||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
33618422 |
gttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttc |
33618323 |
T |
|
| Q |
213 |
tgttgacctaataagttcttctcactcg |
240 |
Q |
| |
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||| || | |||||||||||| ||||| |
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| T |
33618322 |
tgtccacttgataagttcttctaactcg |
33618295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 33622678 - 33622491
Alignment:
| Q |
46 |
tgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattacca |
145 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||| ||| |||||||| ||||||| | |
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| T |
33622678 |
tgtcccaaacccaaagaactaaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaa |
33622579 |
T |
|
| Q |
146 |
agtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttcttc |
233 |
Q |
| |
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|||||| ||||||| ||||| | ||||||||||||||| |||| || | ||||||| |||||| ||||||| ||||| ||||||| |
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| T |
33622578 |
tctgaggttgatactctctttttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttc |
33622491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 33588619 - 33588448
Alignment:
| Q |
25 |
gcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacg |
124 |
Q |
| |
|
||||||||||||| | | |||| ||| || |||| |||| ||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| | |
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| T |
33588619 |
gcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatg |
33588520 |
T |
|
| Q |
125 |
ggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgca |
196 |
Q |
| |
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|||||| | ||||| ||||||||||||||||| | || | |||||||| |||| ||||||||||||| |
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| T |
33588519 |
ggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgca |
33588448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 33595791 - 33595620
Alignment:
| Q |
25 |
gcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacg |
124 |
Q |
| |
|
||||||||||||| | | |||| ||| || |||| |||| ||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| | |
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| T |
33595791 |
gcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatg |
33595692 |
T |
|
| Q |
125 |
ggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgca |
196 |
Q |
| |
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|||||| | ||||| ||||||||||||||||| | || | |||||||| |||| ||||||||||||| |
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| T |
33595691 |
ggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgca |
33595620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 33602922 - 33602751
Alignment:
| Q |
25 |
gcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacg |
124 |
Q |
| |
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||||||||||||| | | |||| ||| || |||| |||| ||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| | |
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| T |
33602922 |
gcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatg |
33602823 |
T |
|
| Q |
125 |
ggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgca |
196 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| | || | |||||||| |||| ||||||||||||| |
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|
| T |
33602822 |
ggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgca |
33602751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 33563069 - 33562981
Alignment:
| Q |
70 |
aggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgata |
158 |
Q |
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|||||||||| |||||| |||| ||||||||||| || | ||||||||||| ||| || || | || || ||||||||||||||||| |
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| T |
33563069 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgata |
33562981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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