View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_40 (Length: 240)
Name: NF7814_low_40
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 39725068 - 39724860
Alignment:
| Q |
17 |
gtgtgatttatttggatgttggatccttcttgctgaacagtttttagcaactgatccaaagtttaagcatagttttgtgaaaaatttgttgaatgataaa |
116 |
Q |
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| T |
39725068 |
gtgtgatttatttggatgttggatccttcttgctgaacagtttttagctactgatccaaattttaagcatagttttgtgaaaaatttgttgaatgataaa |
39724969 |
T |
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| Q |
117 |
aatttg--nnnnnnnntgacttaatcgaatttaattacatttgtcggtgtcggacagtggatacgccttccatcagaagtgtagtttgtagagagatttt |
214 |
Q |
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| T |
39724968 |
aatttgaaaaaaaaaatgacttaatcgaatttaattacatttgtcggtgtcggacagtggatacgccttccatcagaagtgtagtttgtagagagatttt |
39724869 |
T |
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| Q |
215 |
gttgcttaa |
223 |
Q |
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| T |
39724868 |
gttgcttaa |
39724860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 39724790 - 39724703
Alignment:
| Q |
21 |
gatttatttggatgttggatccttcttgctgaacagtttttagcaactgatccaaagtttaagcatagttttgtgaaaaatttgttga |
108 |
Q |
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| T |
39724790 |
gattaatttggatgttgaatcctttgttatgaacagtttatactaacttatccgaagtttaagcatagttttgttaaaattttgttga |
39724703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 15552785 - 15552694
Alignment:
| Q |
19 |
gtgatttatttggatgttggatccttcttgctgaacagtttttagcaactgatccaaagtttaagcatagttttgtgaaaaatttgttgaat |
110 |
Q |
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| T |
15552785 |
gtgattgatttggatgttcgatcttttgtgctgaatagtttatattaactgatccaaagtgtgagcacagtactgtgaaaattttgttgaat |
15552694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 8419138 - 8419200
Alignment:
| Q |
135 |
ttaatcgaatttaattacatttgtcggtgtcggaca-gtggatacgccttccatcagaagtgt |
196 |
Q |
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| T |
8419138 |
ttaattgaatgtaatgacatgtgtcggtgtcggacacgtggacacgccttccatcagaagtgt |
8419200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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