View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_5 (Length: 511)
Name: NF7814_low_5
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Original strand, 39109263 - 39109722
Alignment:
| Q |
13 |
aatatcatggggtttgaattaatgcatatgccagcttgtaatgaaaatttccccacacttgcttttaaatctcctatcaaattcaatgcacattaaaagg |
112 |
Q |
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| T |
39109263 |
aatatcatggggtttgaattaatgcatatgccagcttgtaatgaaaatttccccacacttgcttttaaatctcctatcaaattcaatgcacattaaaagg |
39109362 |
T |
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| Q |
113 |
tataacaaggaagaccaatcaatatttaatgcattattataaagttgcgtaatttggttcacatatttcaactgttttggtttggtaacagacttgttct |
212 |
Q |
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| T |
39109363 |
tataacaaggaagaccaatcaatatttaatgcattattataaagtagcgtaatttggttcacatatttcaactgttttggtttggtaacagacttgttct |
39109462 |
T |
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| Q |
213 |
atttttaacaggttacagtactttgttttgattaagttaatgttaatggagtatagtaaatggattaatttattggattttgattaaattttgttaatgt |
312 |
Q |
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| T |
39109463 |
atttttaacaggttacagtactttgttttgattaagttaatgtt--------------aatggattaatttattggattttgattaaattttgttaatgt |
39109548 |
T |
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| Q |
313 |
gaatttcagatacttggttttgggcaaagcatgttgtcacttaggcctaatggaagatgcaatggttcttttgcaaaccggaaaacgtctcgcaagtgcg |
412 |
Q |
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| T |
39109549 |
aaatttcagatacttggttttgggcaaagcatgttgtcacttaggcctaatggaagatgcaatggttcttttgcaaaccggaaaacgtctcgcgagtgca |
39109648 |
T |
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| Q |
413 |
gcatttcgtcgtgaaagcgtttgttggtctgatgacagcttctctctatggagctcaccgttctccggtgatgg |
486 |
Q |
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| T |
39109649 |
gcatttcgtcgtgaaagcgtttgttggtctgatgacagcttctccctgtggagctcaccgttctccggtgatgg |
39109722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 47058782 - 47058853
Alignment:
| Q |
290 |
ttttgattaaattttgttaatgtgaatttcagatacttggttttgggcaaagcatgttgtcacttaggccta |
361 |
Q |
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|||| ||| |||||| | |||||||||| |||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
47058782 |
ttttcattgaattttatgaatgtgaattacagatacttggttttgggggaagcatgttttcatttaggccta |
47058853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 44706928 - 44706850
Alignment:
| Q |
319 |
cagatacttggttttgggcaaagcatgttgtcacttaggcctaatggaagatgcaatggttcttttgcaaaccggaaaa |
397 |
Q |
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| T |
44706928 |
cagatacttggttttgggtgaagcatgctgccatctaggactgatggaggatgcaatggttcttctccaaacaggaaaa |
44706850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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