View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_6 (Length: 494)
Name: NF7814_low_6
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 493
Target Start/End: Complemental strand, 1697134 - 1696646
Alignment:
| Q |
10 |
atcaaaatcatcccagctctaaaaactccaaaatttaagtaaatcaaaatcaatcacacacgcttatctcatgccaannnnnnnnatttggatgagctta |
109 |
Q |
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| T |
1697134 |
atcaaaatcatcccagctctaaaaactccaaaatttaagtaaatcaaaatca-tcacacacgcttatctcatgccatttttttttatttggatgggctta |
1697036 |
T |
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| Q |
110 |
aataataacaacaataatattggatgttctccattcaagtcgactcgtccatgacttaacagctgttcgatagagatcatactattcaaatttttaaatt |
209 |
Q |
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| T |
1697035 |
aataataacaacaataatattggattttcttcattcaagttgactcgtcgatgactaaacaactattagatagagatcagactattcaaatttttaaatt |
1696936 |
T |
|
| Q |
210 |
agcaattttaatattaaaatcgttcgatatcgatcaaacgattccacatttactaacttcatgaatatgtgtagccgagctaatccaagtttcataataa |
309 |
Q |
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| T |
1696935 |
agcaattttaatattaaaatcgttcgatatcgatcaaacgattccatagttactaacttcatgaatgtgtgtagttgagctagtccaagtttcataataa |
1696836 |
T |
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| Q |
310 |
agagataacttctaaaagtaattttaatatt------nnnnnnnnnnnttctttaatattaaaactgttcgatttcgatcagacgattatgcatttgcta |
403 |
Q |
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| T |
1696835 |
agagataacttctaaaagcaattttaatattaaaaaaaaaataaaaaattcttcaatattaaaatcgttcgatttcgatcagacgattctgcagttacta |
1696736 |
T |
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| Q |
404 |
aacttcatgaatgtgtatagtcgagctaatccaattttcataataatgagataacttcaaaaacgaccaaacgagttattaacttcatga |
493 |
Q |
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| T |
1696735 |
aacttcatgaatgtgtgtaatcgagctaatccaattttcataataacgagataacttcaaaaacgaccaaaggagttattaacttcatga |
1696646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 466
Target Start/End: Complemental strand, 1696655 - 1696594
Alignment:
| Q |
404 |
aacttcatgaatgtgtatagtcgagctaatccaattttcataataatgagataacttcaaaaa |
466 |
Q |
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| T |
1696655 |
aacttcatgaatgtgtatagtcgagctaatccaattttcataataa-gagataacttcaaaaa |
1696594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 1696656 - 1696594
Alignment:
| Q |
263 |
taacttcatgaatatgtgtagccgagctaatccaagtttcataataaagagataacttctaaaa |
326 |
Q |
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| T |
1696656 |
taacttcatgaatgtgtatagtcgagctaatccaattttcataat-aagagataacttcaaaaa |
1696594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 1686831 - 1686766
Alignment:
| Q |
62 |
atcacacacgcttatctcatgccaannnnnnnnatttggatgagcttaaataataacaacaataat |
127 |
Q |
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| T |
1686831 |
atcacacacgcctatctcatgccaaaaatttaaatttggatgagcttaaataacaacaacaataat |
1686766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 464
Target Start/End: Complemental strand, 1686138 - 1686085
Alignment:
| Q |
410 |
atgaatgtgtatagtcgagctaatccaattttcataataatgagataacttcaaa |
464 |
Q |
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| T |
1686138 |
atgaatgcgtgtagtcgagctaatccaattttca-aataaatagataacttcaaa |
1686085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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