View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_8 (Length: 462)
Name: NF7814_low_8
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 46011711 - 46011269
Alignment:
| Q |
1 |
tcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46011711 |
tcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttctggtc |
46011612 |
T |
|
| Q |
101 |
ctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattacc |
200 |
Q |
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| T |
46011611 |
ctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattacc |
46011512 |
T |
|
| Q |
201 |
ttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
46011511 |
ttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatccatgattctcgttc |
46011412 |
T |
|
| Q |
301 |
annnnnnnctcagcaattagcttcactaattctgatatttcagattccccaggtgataaacttgtttcgattttgctcaacaccgagccatttgtcggga |
400 |
Q |
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| T |
46011411 |
atttttttctcagcaattagcttcactaattctgatatttcagattccccaggtgataaacttgtttcgattttgctcaacaccgagccatttgtcggga |
46011312 |
T |
|
| Q |
401 |
attcattttcagcgcgattagagatatttgtagtacatattgt |
443 |
Q |
| |
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| T |
46011311 |
attcattttcagcgcgattagagatatttgtagtacatattgt |
46011269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 13116568 - 13116137
Alignment:
| Q |
12 |
tgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtcctgaaagaacc |
111 |
Q |
| |
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||||||||||||||||| |||||||||||||| || || || |||| ||||| |||||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
13116568 |
tgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatcttctggtcctggaagaacc |
13116469 |
T |
|
| Q |
112 |
aaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattaccttcttccaaat |
211 |
Q |
| |
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| T |
13116468 |
aaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcgtaaaaatcagcctcttccaagt |
13116369 |
T |
|
| Q |
212 |
ctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcattcannnnnnnctc |
311 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||| |
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| T |
13116368 |
ctacaaatgttaacttagctccataaactataaaatgctctttgccttcaccgtcctccacaattttttccaatacatgattctcattcatttttttctc |
13116269 |
T |
|
| Q |
312 |
agcaattagcttcactaattctgatatttcagattccccaggtgataaacttgtttcgattttgctcaacaccgagccatttgtcgggaattcattttca |
411 |
Q |
| |
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| ||| || || |||| ||| |||| | || || |||||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
13116268 |
ggtaatcagatttgctaaatctaatatattagcttgatcaggtggaaaatttgtttcaattttgctcaacacggagccatttgttgggaattcattttca |
13116169 |
T |
|
| Q |
412 |
gcgcgattagagatatttgtagtacatattgt |
443 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
13116168 |
gcacgattagagatatttgtagtacatattgt |
13116137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 413
Target Start/End: Complemental strand, 15924739 - 15924349
Alignment:
| Q |
23 |
atttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtcctgaaagaaccaaaacaactcc |
122 |
Q |
| |
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||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||||| || |||| || ||||||||||||||| |
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| T |
15924739 |
atttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactcc |
15924640 |
T |
|
| Q |
123 |
ttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattaccttcttccaaatctacaaatgtt |
222 |
Q |
| |
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||||||||| |||||||| ||||||||||| ||| ||| ||||||| ||||||| |||||||||||| |||| | |||||||||| |||||||||||| |
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| T |
15924639 |
ttgatcaccgacaccacgtaaatcacaattcgccctaataggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgtt |
15924540 |
T |
|
| Q |
223 |
aactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcattcannnnnnnctcagcaattagct |
322 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| ||||||| ||||| || |||||||||| ||| ||||||||| | |||| |||| || | |
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| T |
15924539 |
aactttgctccatatacaaaaaaatcatcttttccatcacctttctccaccaatttttccaatgcataattctcattaatttttttctcaccaatcagat |
15924440 |
T |
|
| Q |
323 |
tcactaattctgatatttcagattccccaggtgataaacttgtttcgattttgctcaacaccgagccatttgtcgggaattcattttcagc |
413 |
Q |
| |
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||| ||| ||| |||| | | ||||| | || ||| ||||||||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
15924439 |
tcattaaatctaatatattatattcctccgggcgcaaatttgtttcgattttgctcaacaatatgtcatttgttgggaattcattttcagc |
15924349 |
T |
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