View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7814_low_9 (Length: 457)
Name: NF7814_low_9
Description: NF7814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7814_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 35037219 - 35037438
Alignment:
| Q |
16 |
atctaatattaattatgatctcattattttcaaatagtctaatatatttagtgattaaatattcgttgttgtaatagactatttaataatcttgtaaacn |
115 |
Q |
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| T |
35037219 |
atctaatattaattatgatctcattattttcaaatagtctaatatatttagcgattaaatattcgttgttgtaatagactattgaataatcgtgtaaaca |
35037318 |
T |
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| Q |
116 |
nnnnnnnnngactatttaatgatcgtatatatacaaatctataatagaaat-----ggatgaagaattgagtaatacattggttttatattagattggtt |
210 |
Q |
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| T |
35037319 |
aaaaaaaaagactatttaatgatcgtatatatacaaatctataatagaaattaaatggatgaagaattgagtaatacattggttttatattagattggtt |
35037418 |
T |
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| Q |
211 |
ttagattgtgcatgcatgtt |
230 |
Q |
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| T |
35037419 |
ttagattgtgcatgcatgtt |
35037438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 35037469 - 35037576
Alignment:
| Q |
226 |
atgttgcttttgtttcaggctcactgtagatgattaaattgaggtaggtgaaacaatagattctgaatcttatccacagcatccaggtgaaccagattgt |
325 |
Q |
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| T |
35037469 |
atgttgcttttgtttcaggctcattgtagatgattaaattgaggtaggtgaaacaatagattctgaatcttatccacagcatccaggtgaaccagattgt |
35037568 |
T |
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| Q |
326 |
tcatatta |
333 |
Q |
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| T |
35037569 |
tcatatta |
35037576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 35037638 - 35037719
Alignment:
| Q |
332 |
tagtaacgtacaatgtatttctacatattttgttcttattagttatgttgatacttaatacataatttattcctctagttgc |
413 |
Q |
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| T |
35037638 |
tagtaacgtacaatgtatttttacatattttgttcttattagttatgttgatacttaatacataatttattcctctagttgc |
35037719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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