View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7815_high_2 (Length: 240)
Name: NF7815_high_2
Description: NF7815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7815_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 24544764 - 24544622
Alignment:
| Q |
80 |
taaacatgcagagcaatgaagtaaaaacacacatgattcatgaagaaaccgaacttattcgcatattgaatattgtatttcctaaagaaacaatattaat |
179 |
Q |
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| T |
24544764 |
taaacatgcagagcaataaagtaaaaacacacatgattcatgaagaaacttaactttttcgcatattgaatattgtatttcctaaagaaacaatattaat |
24544665 |
T |
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| Q |
180 |
aatataagaggattcatgaagcaacaatccagatatgcagaac |
222 |
Q |
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| T |
24544664 |
aatataagaggattcatgaagcaacaatccagatatgcagaac |
24544622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 24554606 - 24554748
Alignment:
| Q |
80 |
taaacatgcagagcaatgaagtaaaaacacacatgattcatgaagaaaccgaacttattcgcatattgaatattgtatttcctaaagaaacaatattaat |
179 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24554606 |
taaacatgcagagcaataaagtaaaaacacacatgattcatgaagaaacctaactttttcgcatattgaatattgtatttcctaaagaaacaatattaat |
24554705 |
T |
|
| Q |
180 |
aatataagaggattcatgaagcaacaatccagatatgcagaac |
222 |
Q |
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| T |
24554706 |
aatataagaggattcattaagcaacaatccagatatgcagaac |
24554748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 24557667 - 24557809
Alignment:
| Q |
80 |
taaacatgcagagcaatgaagtaaaaacacacatgattcatgaagaaaccgaacttattcgcatattgaatattgtatttcctaaagaaacaatattaat |
179 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24557667 |
taaacatgcagagcaataaagtaaaaacacacatgattcatgaagaaacctaactttttcgcatattgaatattgtatttcctaaagaaacaatattaat |
24557766 |
T |
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| Q |
180 |
aatataagaggattcatgaagcaacaatccagatatgcagaac |
222 |
Q |
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| T |
24557767 |
aatataagaggattcattaagcaacaatccagatatgcagaac |
24557809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 38760790 - 38760864
Alignment:
| Q |
131 |
aacttattcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaat |
207 |
Q |
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||||| ||| ||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||| |
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| T |
38760790 |
aactttttcacatattgaatattgtattttcttaaaaaacaatattaata--tcaaaaggattcatgaagcaacaat |
38760864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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