View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7815_low_1 (Length: 449)
Name: NF7815_low_1
Description: NF7815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7815_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 6156536 - 6156122
Alignment:
| Q |
20 |
atcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctgaacc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6156536 |
atcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctgaacc |
6156437 |
T |
|
| Q |
120 |
gtctgttatctatcgagacatgaaatctgccaacattttattggacaacgacttcaacgcaaaactgtctgattttggtcttgcaaaattaggacctacc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6156436 |
gtctgttatctatcgagacatgaaatctgccaacattttattggacaacgacttcaacgcaaaactgtccgattttggtcttgcaaaattaggacctacc |
6156337 |
T |
|
| Q |
220 |
ggaggcaacactcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6156336 |
ggaggcaacactcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaacccgacaatctgatatct |
6156237 |
T |
|
| Q |
320 |
atagttttggtatggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6156236 |
atagttttggtatggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaat |
6156137 |
T |
|
| Q |
420 |
ttagtttgtatatat |
434 |
Q |
| |
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||||||||||||||| |
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| T |
6156136 |
ttagtttgtatatat |
6156122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 54032212 - 54031801
Alignment:
| Q |
20 |
atcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctgaacc |
119 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || || || |
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| T |
54032212 |
atcttccccaagacaaagaacctctaagctggagttctcgaatgaagattgctgttggagcagctcgtggccttgagtatctccactgtaaagcagatcc |
54032113 |
T |
|
| Q |
120 |
gtctgttatctatcgagacatgaaatctgccaacattttattggacaacgacttcaacgcaaaactgtctgattttggtcttgcaaaattaggacctacc |
219 |
Q |
| |
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| |||| || ||||||||| | |||||||| ||||| ||||| |||| |||||||| | |||||||||| |||||||| ||||| || |||||||| |
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|
| T |
54032112 |
gcctgtcatatatcgagacttaaaatctgcaaacatcttattagacagcgacttcagcccaaaactgtcagattttgggcttgctaagctaggacctgtt |
54032013 |
T |
|
| Q |
220 |
ggaggcaacactcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatct |
319 |
Q |
| |
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|||| |||||| |||||| ||| |||||||||||||| | |||||||| || ||||||||||||| || |||||||||||||| | |||||||||| |
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| T |
54032012 |
ggagacaacacccatgtttcaacgagagtgatgggtacatatggctactgcgcgccagaatatgcgatgagtggcaaattaactcttaagtctgatatct |
54031913 |
T |
|
| Q |
320 |
atagttttggtatggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaat |
419 |
Q |
| |
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| || |||||| |||||||| | |||||||| |||||||| || ||| ||||| | ||| || | ||||||||| | ||||| | ||||||||||| || |
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| T |
54031912 |
acagctttggtgtggttttgttggagttgattactggacgaagggcaatagatgctagtaaaaaaccaggagagcaaaacttagtttcatgggtaaatat |
54031813 |
T |
|
| Q |
420 |
ttagtttgtata |
431 |
Q |
| |
|
|||||| ||||| |
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|
| T |
54031812 |
ttagttcgtata |
54031801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 427
Target Start/End: Complemental strand, 56020834 - 56020430
Alignment:
| Q |
23 |
ttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctgaaccgtc |
122 |
Q |
| |
|
|||||| |||||||| || |||| ||||| ||||| || |||||| || |||||||||||| ||||||||||||||||| ||| | | ||| || | |
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| T |
56020834 |
ttacccaagacaaagctccattaagttggagctctcggataaagatttctcttggagcagctcaaggtcttgagtatctccactgtcaagttgatccacc |
56020735 |
T |
|
| Q |
123 |
tgttatctatcgagacatgaaatctgccaacattttattggacaacgacttcaacgcaaaactgtctgattttggtcttgcaaaattaggacctaccgga |
222 |
Q |
| |
|
|||||| |||||||| |||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||| || ||||| ||| | ||||| ||| |
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|
| T |
56020734 |
ggttatccatcgagacttgaaatcttcaaacattttactggaacatgacttcagtgcaaaactgtcagatttcgggcttgctaaacttggaccggttgga |
56020635 |
T |
|
| Q |
223 |
ggcaacactcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatctata |
322 |
Q |
| |
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| | |||| |||||| |||| ||||||||||||| |||||||| || |||| ||||||||| | |||||||||||||||| |||||| |||||||| | |
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| T |
56020634 |
gacgacacacatgtttcaacccgagtgatgggtaccgaaggctattgcgcactagaatatgctatgactggcaaattaactaaacaatccgatatctaca |
56020535 |
T |
|
| Q |
323 |
gttttggtatggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaattta |
422 |
Q |
| |
|
|||||||| |||||||||| || |||| || ||||||||||| || |||| | |||| |||||| |||| | ||||| | |||||||||| ||||| |
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| T |
56020534 |
gttttggtgtggttttgctggaactgataaccggacgtagagccctggatactagtagggaagcaggggagcaatacttagttgcatgggtaaatattta |
56020435 |
T |
|
| Q |
423 |
gtttg |
427 |
Q |
| |
|
||||| |
|
|
| T |
56020434 |
gtttg |
56020430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 21139538 - 21139474
Alignment:
| Q |
142 |
aaatctgccaacattttattggacaacgacttcaacgcaaaactgtctgattttggtcttgcaaa |
206 |
Q |
| |
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|||||| ||||||| ||||||||||| || ||||| |||||||| ||||||||||| || ||||| |
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|
| T |
21139538 |
aaatcttccaacatcttattggacaaagatttcaatgcaaaactctctgattttggactagcaaa |
21139474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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