View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_high_17 (Length: 235)
Name: NF7816_high_17
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 6353418 - 6353208
Alignment:
| Q |
25 |
ccactttcttctccttccacatcatcaatcataacaaagatgttgaagaacttaacaaaagatctcaccacagcacttcattccaccattccagtcataa |
124 |
Q |
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| T |
6353418 |
ccactttcttctccttccacattatcaatcataacaaagatgttgaagaacttaacaaaagatctcaccacagcagttcattccaccattccagtcataa |
6353319 |
T |
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| Q |
125 |
ccaatattgcatcctcacaagaatctttgttgcaagatgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagac |
224 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353318 |
ccaatattgcatcctcacaagactctttgttgcaagatgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagac |
6353219 |
T |
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| Q |
225 |
taacaacacca |
235 |
Q |
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| T |
6353218 |
taacaacacca |
6353208 |
T |
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