View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7816_low_10 (Length: 399)
Name: NF7816_low_10
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 32 - 380
Target Start/End: Original strand, 31871426 - 31871783
Alignment:
| Q |
32 |
attgcagagatttttattagctatgttgtcagttctgcagcttgctgtaacgcgcaattgcagaatcgcgggagctatgctcgtctgcgacataattcta |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31871426 |
attgcagagatttttattagctatgttgtcagttctgcagcttgctgtaaagcgcaattgcagaatcgcgggagctatgctcgtctgcgacataattcta |
31871525 |
T |
|
| Q |
132 |
ttgtgtgtttactgggccggcggctatcgcagctgcaaaagtgctattccagcgcgacacttcgttaacaacactcac---------gaatggaattcat |
222 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
31871526 |
ttgtatgtttactgggc---cggctatcgcagctgcaaaagtgctattccagcgcgacactacgttaacaacactcactcttttattgaatggaattcat |
31871622 |
T |
|
| Q |
223 |
gttagttctgcattttgaaaaattggccccatttaaagtga---gacccacgtgatttcattcgagaaccagaaaaatgcccaattatgttcatgtagaa |
319 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31871623 |
gtgagttcggcattttgaaaaattggccccatttaaagtgacgggacccacgtgatttcattcgagaaccagaaaaatgcccaattatgttcatgtagaa |
31871722 |
T |
|
| Q |
320 |
gcatcaaagtacctaccaataacaagtaaattgaattcgctataggaaaatacccaattta |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31871723 |
gcatcaaagtacctaccaataacaagtaaattgaattcgctataggaaaatacccagttta |
31871783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University