View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_15 (Length: 311)
Name: NF7816_low_15
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 29592465 - 29592768
Alignment:
| Q |
20 |
tgtggaagagatgccggagatggctaaacagtggttgtttccttgagatgatttaacgagccaccaatcgtataatgtaaccgttcgttggaagcaagaa |
119 |
Q |
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| T |
29592465 |
tgtggaagagatgccggagatggctaaacggtggttgtttccttgggatgatttaacgagccaccaatcgtacaatgtaaccgttcgttggaagcaagaa |
29592564 |
T |
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| Q |
120 |
---------------gaagaagaagttgtgggggtgcaattagaagaactgggagtgaaatcagccattgattgtgtgaatcgccgatactgaatgctat |
204 |
Q |
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| T |
29592565 |
gaagaagaagtagaagaagaagaagttgtgggggtgcaattagaagaattgggagtgaaatcagccattgattgtgtgaatcgccgatactgaatgctat |
29592664 |
T |
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| Q |
205 |
atgtgccc-----agaggagaggagaggagactctatcacattggacagtcgcgaaagtataatcaacaaagtgaaaccacctttaccaatgtagatctt |
299 |
Q |
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| T |
29592665 |
atgtgcccagaggagaggagaggagaggagactctatcacattggacagtcgcgaaagtataatcaacaaagtgaaaccacctttaccaatgtagatctt |
29592764 |
T |
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| Q |
300 |
tgtt |
303 |
Q |
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|||| |
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| T |
29592765 |
tgtt |
29592768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 29585152 - 29585231
Alignment:
| Q |
22 |
tggaagagatgccggagatggctaaacagtggttgtttccttgagatgatttaacgagccaccaatcgtataatgtaacc |
101 |
Q |
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|||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
29585152 |
tggatgagatgccagagatggctaaacggtggttgtttccttgggatgatttaacgagccaccaatcgtataaagtaacc |
29585231 |
T |
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