View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_2 (Length: 587)
Name: NF7816_low_2
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 6157382 - 6156793
Alignment:
| Q |
1 |
acacactttgctatattttgttgcatttgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttct |
100 |
Q |
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| T |
6157382 |
acacactttgctatattttgttgcatttgcagcttgttgcagtgaaacggttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttct |
6157283 |
T |
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| Q |
101 |
tatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggtttatgaatacatgcctaag |
200 |
Q |
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| T |
6157282 |
tatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaagtatagatcaaaagcttttggtttatgaatacatgcctaag |
6157183 |
T |
|
| Q |
201 |
ggatgtcttgaagatcatctttttggtaatcttttgc-ttgtttatttatttctctcatgccaccacttaatagtttagttatg--atgcagctgaaggt |
297 |
Q |
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| T |
6157182 |
ggatgtcttgaagatcatctttttggtaatcttttgctttgtttatttattactctcatgccaccacttaatagtatagttatgatatgcagctgaaggt |
6157083 |
T |
|
| Q |
298 |
ttttcatctttgttttatgataacaaatttatctagtgtttaaacacctatgttcatttatcttagtctcgtannnnnnnnaactctacctatacatcat |
397 |
Q |
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| T |
6157082 |
ttttcatctttgttttatgataacaaatttatctagtgtttaaacacctatgttcatttatcttagtctcgtattttttttaactctacctatacatcac |
6156983 |
T |
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| Q |
398 |
atgttttatgttgatacattgttcttctcctactaatttacatgcataataaagatagtgtaactgcatagtttaaattcttttgtccactttcatcttc |
497 |
Q |
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| T |
6156982 |
atgttttctgttgatacattgttcttctcccactaatttacatgcataataaagatagtgtaactgcatagtttaaattcttttgtccactttcatcttc |
6156883 |
T |
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| Q |
498 |
aatggaaattcttgtgatttagtttaaattggactatagagctacttcaactttgtttatgactgaactttgttgtcaatgacaaacgtc |
587 |
Q |
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| T |
6156882 |
aatggaaattcttgtgatttactttaaattggactatagagctgcttgaactttgtttatgactgaactttgttgtcaatgacaaacgtc |
6156793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 56021111 - 56020917
Alignment:
| Q |
28 |
tgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaa |
127 |
Q |
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| T |
56021111 |
tgcagcttgttgcagtaaaacagttaaatcctgatggttgtcaaggctgtcacgaatttatgacagagcttgatattctaagtgtgctgcgtcatgc--- |
56021015 |
T |
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| Q |
128 |
ttatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttg |
225 |
Q |
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| T |
56021014 |
taatcttgttaagttaattggttattgcaccaatggagatcaaatgcttttggtttatgaatacatgcctaagggatctcttgaagctcatctttttg |
56020917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 54033450 - 54033244
Alignment:
| Q |
26 |
tttgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattcc |
125 |
Q |
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| T |
54033450 |
tttgcagcttgttgctgtgaaacaattaagtcatgatggtcgtcaaggttttcaggaatttgtgactgaggttcttatgttaagcttgctacatcattct |
54033351 |
T |
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| Q |
126 |
aattatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggtttatgaatacatgcctaagggatgtcttgaagatcatctttttg |
225 |
Q |
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| T |
54033350 |
aat---ctggttaagttaattggctactgcactgatggagatcaaaggcttttggtttatgagtacatgcctatgggatctctcgaagatcatctttttg |
54033254 |
T |
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| Q |
226 |
gtaatctttt |
235 |
Q |
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| T |
54033253 |
gtaacctttt |
54033244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 54033190 - 54033134
Alignment:
| Q |
276 |
tagttatgatgcagctgaaggtttttcatctttgttttatgataacaaatttatctag |
333 |
Q |
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| T |
54033190 |
tagttatgatacagctgaaggcttttcatctttg-tttatgacaataaatttatctag |
54033134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 28342080 - 28342031
Alignment:
| Q |
180 |
gtttatgaatacatgcctaagggatgtcttgaagatcatctttttggtaa |
229 |
Q |
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| T |
28342080 |
gtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaa |
28342031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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