View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_22 (Length: 233)
Name: NF7816_low_22
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 6134777 - 6134572
Alignment:
| Q |
14 |
aagaattctaagtcttcatatgctgctttttagcagacaacaatggaagtatagagtatcctattgtgcactgtggttttttcacaacttgtatgaaatg |
113 |
Q |
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| T |
6134777 |
aagaattctaagtcttcatatgctgctttttagcagacaacaatggaagtatagagtatcctattgtgcactgtggttttttcacaacttgtatgaaatg |
6134678 |
T |
|
| Q |
114 |
aaattgaggactgctatttatagcgagaggattttcttcacgaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctgtacacaaatcacgg |
213 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134677 |
aaattgaggactgctattcatagcgagagga--ttcttcatgaagtgctcgcaaaatccttgtcaaccaatcaaaatctggttctgtacacaaatcacgg |
6134580 |
T |
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| Q |
214 |
aagttgtg |
221 |
Q |
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|||||||| |
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| T |
6134579 |
aagttgtg |
6134572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 41895393 - 41895293
Alignment:
| Q |
119 |
gaggactgctatttatagcgagaggattttcttcacgaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctgtacacaaatcacggaagtt |
218 |
Q |
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||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41895393 |
gaggactactattcatagcgagaggatt--cttcacgaagcgctcgcgaaatccttctcaaccaatcaaaatctggttctgtacacaaatcacagaagtt |
41895296 |
T |
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| Q |
219 |
gtg |
221 |
Q |
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||| |
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| T |
41895295 |
gtg |
41895293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 46904054 - 46903980
Alignment:
| Q |
145 |
ttttcttcacgaagtgctcgcgaaatccttgtcaaccaatcaaaatctggttctgtacacaaatcacggaagttg |
219 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
46904054 |
ttttcttcaagaagtgctcacgaaatccttgtcaaccaatcaaaatctggctctggccacaaatcacggaagttg |
46903980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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