View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7816_low_3 (Length: 541)
Name: NF7816_low_3
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 13795160 - 13794643
Alignment:
| Q |
17 |
aaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctggagagatctttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795160 |
aaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctggagagatctttc |
13795061 |
T |
|
| Q |
117 |
atttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggatcaacgagtttat |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13795060 |
atttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggatcaacgagtttac |
13794961 |
T |
|
| Q |
217 |
ttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaacaaaacatatttac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13794960 |
ttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaacaaaacatatttac |
13794861 |
T |
|
| Q |
317 |
atttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgtttta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13794860 |
atttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctcaatcttgtttta |
13794761 |
T |
|
| Q |
417 |
ttttcaaaattacctttgctattgtcactaaatttgtttgnnnnnnnnnncttgtattggattaggttctctgtttgatgattttattggattttatcac |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13794760 |
ttttcaaaattacctttgctattgtcactaaatttgtttg--ttttttttcttgtattggattaggttctctgtttgatgattttattggattttatcac |
13794663 |
T |
|
| Q |
517 |
tgattgagttctctgctact |
536 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
13794662 |
tgattgagttctctgttact |
13794643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 16025369 - 16025445
Alignment:
| Q |
17 |
aaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaa |
93 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| || ||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
16025369 |
aaacatcacatagaagtgaaaatctagtttgtaacacgatgtctctagaattcgtcaactgacagttgatggcacaa |
16025445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University