View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7816_low_4 (Length: 539)

Name: NF7816_low_4
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7816_low_4
NF7816_low_4
[»] chr4 (12 HSPs)
chr4 (19-531)||(39305791-39306302)
chr4 (386-519)||(30617211-30617343)
chr4 (438-526)||(26275534-26275622)
chr4 (436-519)||(415131-415214)
chr4 (387-467)||(41364956-41365036)
chr4 (445-519)||(33714228-33714302)
chr4 (385-467)||(42647416-42647498)
chr4 (385-455)||(4447944-4448014)
chr4 (446-492)||(19984344-19984390)
chr4 (365-414)||(13253174-13253223)
chr4 (398-490)||(34581594-34581686)
chr4 (435-471)||(46891320-46891356)
[»] chr7 (27 HSPs)
chr7 (378-526)||(23117293-23117441)
chr7 (386-519)||(30900054-30900187)
chr7 (378-518)||(2898879-2899019)
chr7 (383-489)||(24672213-24672319)
chr7 (385-491)||(24672804-24672909)
chr7 (398-519)||(38921248-38921369)
chr7 (435-515)||(38774311-38774391)
chr7 (434-521)||(24945591-24945678)
chr7 (379-432)||(31809142-31809195)
chr7 (386-479)||(32612403-32612496)
chr7 (445-521)||(24942479-24942555)
chr7 (387-511)||(18749198-18749324)
chr7 (385-432)||(19043263-19043310)
chr7 (385-432)||(20711326-20711373)
chr7 (385-507)||(2219467-2219588)
chr7 (385-471)||(21173837-21173923)
chr7 (445-519)||(32231748-32231822)
chr7 (379-473)||(32888968-32889062)
chr7 (452-526)||(46404621-46404695)
chr7 (386-471)||(24673366-24673451)
chr7 (438-519)||(28976499-28976580)
chr7 (388-433)||(32736045-32736090)
chr7 (439-508)||(39417759-39417828)
chr7 (388-432)||(5627515-5627559)
chr7 (387-490)||(19130167-19130271)
chr7 (435-511)||(38622870-38622946)
chr7 (378-490)||(44124546-44124658)
[»] chr6 (12 HSPs)
chr6 (385-526)||(33532432-33532573)
chr6 (395-519)||(13427661-13427785)
chr6 (385-511)||(430975-431101)
chr6 (378-505)||(1912440-1912567)
chr6 (386-430)||(30530004-30530048)
chr6 (443-513)||(34881705-34881775)
chr6 (363-415)||(8600773-8600825)
chr6 (461-512)||(9742529-9742580)
chr6 (383-417)||(4886289-4886323)
chr6 (387-429)||(26327938-26327980)
chr6 (446-519)||(4886196-4886269)
chr6 (379-432)||(19041608-19041661)
[»] chr1 (20 HSPs)
chr1 (377-526)||(15255151-15255300)
chr1 (379-506)||(6025905-6026032)
chr1 (384-519)||(46937556-46937682)
chr1 (436-526)||(7347672-7347762)
chr1 (387-519)||(43391477-43391609)
chr1 (436-507)||(3950671-3950742)
chr1 (435-526)||(35220778-35220869)
chr1 (378-484)||(17484572-17484678)
chr1 (388-519)||(7991504-7991635)
chr1 (388-474)||(8856784-8856870)
chr1 (380-442)||(52195632-52195694)
chr1 (445-518)||(49825844-49825917)
chr1 (435-514)||(3240470-3240549)
chr1 (386-519)||(7600420-7600550)
chr1 (456-519)||(8344563-8344626)
chr1 (384-526)||(24808328-24808470)
chr1 (386-474)||(17797624-17797712)
chr1 (397-509)||(22925211-22925323)
chr1 (387-455)||(32434869-32434937)
chr1 (434-506)||(47847980-47848051)
[»] chr5 (16 HSPs)
chr5 (378-470)||(41846717-41846809)
chr5 (385-511)||(16214052-16214178)
chr5 (436-522)||(42217632-42217718)
chr5 (378-519)||(10440209-10440350)
chr5 (386-517)||(9634890-9635020)
chr5 (445-511)||(27725501-27725567)
chr5 (386-439)||(33534632-33534685)
chr5 (399-514)||(6926331-6926446)
chr5 (446-518)||(8928401-8928473)
chr5 (396-459)||(11709459-11709522)
chr5 (383-494)||(31632209-31632320)
chr5 (461-512)||(34114360-34114411)
chr5 (387-465)||(42251599-42251677)
chr5 (390-472)||(42253908-42253990)
chr5 (385-502)||(40213830-40213946)
chr5 (377-409)||(6586614-6586646)
[»] chr3 (13 HSPs)
chr3 (384-525)||(36060245-36060389)
chr3 (383-519)||(5033317-5033453)
chr3 (395-505)||(7877774-7877884)
chr3 (385-449)||(2082056-2082120)
chr3 (442-507)||(29208263-29208328)
chr3 (438-518)||(162890-162970)
chr3 (441-505)||(2990979-2991043)
chr3 (383-430)||(21011361-21011408)
chr3 (448-526)||(54084291-54084369)
chr3 (481-518)||(7277069-7277106)
chr3 (445-486)||(14794295-14794336)
chr3 (388-473)||(50061821-50061906)
chr3 (421-509)||(43381172-43381260)
[»] chr2 (10 HSPs)
chr2 (426-516)||(11530018-11530108)
chr2 (445-516)||(39597566-39597637)
chr2 (426-512)||(28804329-28804415)
chr2 (386-439)||(16866663-16866716)
chr2 (445-505)||(39597642-39597702)
chr2 (435-506)||(18264808-18264879)
chr2 (461-511)||(33623691-33623741)
chr2 (436-490)||(35921517-35921571)
chr2 (446-512)||(42035506-42035571)
chr2 (383-428)||(18569497-18569542)
[»] chr8 (14 HSPs)
chr8 (386-511)||(1310124-1310249)
chr8 (379-472)||(42822618-42822711)
chr8 (441-518)||(9112405-9112482)
chr8 (378-506)||(10354756-10354883)
chr8 (386-472)||(2722146-2722232)
chr8 (363-449)||(7108228-7108314)
chr8 (384-519)||(16900883-16901018)
chr8 (445-521)||(43935150-43935226)
chr8 (378-519)||(21226911-21227052)
chr8 (477-513)||(30580440-30580476)
chr8 (386-469)||(41686218-41686301)
chr8 (388-506)||(8284292-8284410)
chr8 (423-489)||(41931066-41931132)
chr8 (486-526)||(11674048-11674088)
[»] scaffold0223 (1 HSPs)
scaffold0223 (386-468)||(10620-10702)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Complemental strand, 39306302 - 39305791
Alignment:
Q  19 aaggaaatggtttgggttttctttgttgattgattcgttacttgatttgactatggtaaatctaattgtgtaatgaagtctgaaattggcacatcaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39306302 aaggaaatggtttgggttttctttgttgattgattcgttacttgatttgaacatggtaaatctaattgtgtaatgaaatctgaaattggcacatcaaata 39306203  T
Q  119 tgtgattgtgtgacttgaatttggtgatgtgatctctcgtatatggatcttccttgactgatagaacgatgaatctgataaattatagctgccacagcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||    
T  39306202 tgtgattgtgtgacttgaatttggtgatgtgatctctcgtatatggatcttccttgactgaaagaacggtgaatctgataaattatagctgccacaacca 39306103  T
Q  219 ttttttggcagcatcttcagcttcaatgtttattgatgtcatgctggcactcgagaggtgagaataagaaaaccattttttgcaaataatacctactaca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39306102 ttttttggcagcatcttcagcttcaatgtttattgatgtcatgctggcactcgagaggtgagaataagaagaccattttttgcaaataatacctactaca 39306003  T
Q  319 gcctagccgtctacaggtttcgtgcctgtatgaatctgtaaatcagtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctacgcg 418  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  39306002 gcctagtcgtctacaggtttcgtgcctgtatgaatctgtaaataagtgttgttcatcctggatagtgg-aaatagcggtttgttcaaattctgctacgcg 39305904  T
Q  419 gcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39305903 gcagtgctattgtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 39305804  T
Q  519 gtgttatattctt 531  Q
    ||| |||| ||||    
T  39305803 gtgctatagtctt 39305791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 386 - 519
Target Start/End: Original strand, 30617211 - 30617343
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    ||||||||||||||||||||||||  ||||||  || ||||||||  ||||||| ||||||||||||||||||| |||||| ||||||| |||   ||||    
T  30617211 gaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccactatttcacaatattttgtact-aatagcgtatcacagaac 30617309  T
Q  486 aatagtgatatgttcaaattctgctatgcaatag 519  Q
    | ||| ||| ||||||||||| ||||||||||||    
T  30617310 actagcgatttgttcaaattccgctatgcaatag 30617343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 26275534 - 26275622
Alignment:
Q  438 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||||| ||||||||||||||| |||||||||||||| ||  ||||||||||| ||| ||||||||| | |||||||||||||| ||||    
T  26275534 atagccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgctatgcaatagtgctata 26275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 519
Target Start/End: Complemental strand, 415214 - 415131
Alignment:
Q  436 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||||| |||||||||||| ||| ||||||||||||| ||||  | |||||||| ||  ||||||||||||||||||| ||||    
T  415214 ctatagcaactatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatag 415131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 41365036 - 41364956
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtacta 467  Q
    ||||| || ||||||||||||||||||||||  ||||||||||| |  | ||||| | ||||||||||||||| |||||||    
T  41365036 aaaatggcagtttgttcaaattctgctacgcaacagtgctatagcgctgttatagacgctatttcacaatattttgtacta 41364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 33714228 - 33714302
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||||||||||||| |||||||||| ||  |||||||||||| || ||| |||||||||||  |||| ||||||    
T  33714228 ctatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattccactatacaatag 33714302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 42647498 - 42647416
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtacta 467  Q
    ||||||||||||||||||||||||| |||||||  ||  ||| ||||| ||||||| | ||| ||| |||||||| |||||||    
T  42647498 ggaaaatagcggtttgttcaaattccgctacgcaacaaagctctagtgccgctataactactgtttgacaatattttgtacta 42647416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 4448014 - 4447944
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa 455  Q
    ||||||||||||||||||||||||| |||||||  | ||||| |||  | |||| ||||||||||| ||||    
T  4448014 ggaaaatagcggtttgttcaaattccgctacgctacggtgctttagcattgctacagccactatttgacaa 4447944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 19984344 - 19984390
Alignment:
Q  446 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtg 492  Q
    |||||||||||||| ||||||||||| || ||| |||||||||||||    
T  19984344 tatttcacaatattttgtactaaataacgtatcatggaacaatagtg 19984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 13253174 - 13253223
Alignment:
Q  365 tgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgcta 414  Q
    ||||||| ||| || || |||| |||||||||||||||||||||||||||    
T  13253174 tgttgttaatcgtgcatggcggcaaatagcggtttgttcaaattctgcta 13253223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 34581686 - 34581594
Alignment:
Q  398 ttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatag 490  Q
    ||||| |||||||| ||||   ||||||||||| |   |||||||| |||||| |||| ||| |||||||||||||| |||  ||||||||||    
T  34581686 ttgtttaaattctgatacgtaacagtgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaatag 34581594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 46891320 - 46891356
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaata 471  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  46891320 gctatagccgctatttcacaatattttgtactaaata 46891356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 526
Target Start/End: Original strand, 23117293 - 23117441
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||| ||||||||||| ||||||||||||||| |||||| | ||||||||||| |  |||||| |||||||||||||| ||| ||| |||||||||  ||    
T  23117293 ggattgcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacattttgtgctaaatagcatat 23117392  T
Q  478 cgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    | ||||| ||||| ||| ||||||||||||||||| |||||| ||||||    
T  23117393 catggaaaaatagcgatttgttcaaattctgctattcaatagcgttata 23117441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 519
Target Start/End: Original strand, 30900054 - 30900187
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    |||||||| |||||| |||||||| |||| |   |||| ||||||   ||| |||||||||||||||||||||| |||||||||||| | ||||  ||||    
T  30900054 gaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctgaac 30900153  T
Q  486 aatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||| |||  |||||||||| ||||||||||||    
T  30900154 aatagcgattcgttcaaattccgctatgcaatag 30900187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 518
Target Start/End: Complemental strand, 2899019 - 2898879
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||||||||||||||| ||| ||||||||| | |||||    || |||| ||| | |||||||||||||||||||||||||| || | ||||||||| ||    
T  2899019 ggatagcggaaaatagtggtatgttcaaataccgctacataacaatgctgtagggccgctatagccactatttcacaatattttgcattaaatagcgtat 2898920  T
Q  478 cgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    |  |||||||||||||| |||  |||||| |||| ||||||    
T  2898919 cacggaacaatagtgatttgtcgaaattccgctaggcaata 2898879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 489
Target Start/End: Original strand, 24672213 - 24672319
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 482  Q
    ||||||||||| ||||||||||||||| || || | || |||||||||   || | |||||||||||| | |||||| |||||||||||||| || || |    
T  24672213 gcggaaaatagtggtttgttcaaattccgcaacacagcggtgctatagaaccgttgtagccactatttgaaaatattatgtactaaatagcgtattgtag 24672312  T
Q  483 aacaata 489  Q
    |||||||    
T  24672313 aacaata 24672319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 491
Target Start/End: Original strand, 24672804 - 24672909
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |   ||||||||   |||||| |||||||| ||||||| |||| | |||||||||    
T  24672804 ggaaaatagcggtttgttcaaattctgctacgcaatagtgatatggcaccgctatagagcctatttgacaatatt-tgtactatatagagtatcgtggaa 24672902  T
Q  485 caatagt 491  Q
    |||||||    
T  24672903 caatagt 24672909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 519
Target Start/End: Complemental strand, 38921369 - 38921248
Alignment:
Q  398 ttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatg 497  Q
    |||||||||||| ||||| |  || |||||||| | | || |||| |||| ||||||||||| || |||||||||   ||||  |||||| |||||| ||    
T  38921369 ttgttcaaattccgctacacaacaatgctatagcgccactgtagctactacttcacaatattttgcactaaatagtatatcgcagaacaacagtgatttg 38921270  T
Q  498 ttcaaattctgctatgcaatag 519  Q
    ||||||||||| ||||||||||    
T  38921269 ttcaaattctgttatgcaatag 38921248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 38774311 - 38774391
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgca 515  Q
    ||||||||| |||||| |||| ||  |||||||||||||  | ||  ||||||||||||| ||||||||||||||||||||    
T  38774311 gctatagccgctatttgacaacatgatgtactaaatagcataacgctgaacaatagtgatttgttcaaattctgctatgca 38774391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 24945678 - 24945591
Alignment:
Q  434 cgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 521  Q
    ||||| |||| |||||| |||| ||| ||| |||  ||||| ||||||||||||||||||| |||||| |||||| ||||| ||||||    
T  24945678 cgctacagccgctatttgacaacattttgtgctagttagcgtatcgtggaacaatagtgatctgttcatattctgttatgctatagtg 24945591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 31809195 - 31809142
Alignment:
Q  379 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 432  Q
    |||||||||||| ||||||||| |||||||| |||||||  |||||||||||||    
T  31809195 gatagcggaaaacagcggtttgatcaaattccgctacgcaacagtgctatagtg 31809142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 32612403 - 32612496
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcg 479  Q
    ||||||||||||||  |||||||| ||||| |  ||||||||||| | | | ||||||  || ||||||||||| |||||||||||||| ||||    
T  32612403 gaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccaccatagccggtacttcacaatattttgtactaaatagcgtatcg 32612496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 521
Target Start/End: Complemental strand, 24942555 - 24942479
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 521  Q
    |||||| |||| ||| |||||||| ||||| ||| ||||||||||| ||| |||||| |||||| ||||| ||||||    
T  24942555 ctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatattctgttatgctatagtg 24942479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 511
Target Start/End: Original strand, 18749198 - 18749324
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtc--gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    |||||||| ||||||||||||| || ||| |  ||||||||||| ||   ||||||||| || ||| |||| ||||||||||||||| || || | ||||    
T  18749198 aaaatagcagtttgttcaaattatgttacacaacagtgctatagcgtgctgctatagccgctgtttgacaacattctgtactaaatatcgtatagcggaa 18749297  T
Q  485 caatagtgatatgttcaaattctgcta 511  Q
    ||||||   | ||| ||||||||||||    
T  18749298 caatagcattttgtccaaattctgcta 18749324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Complemental strand, 19043310 - 19043263
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 432  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||    
T  19043310 ggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtg 19043263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 432
Target Start/End: Original strand, 20711326 - 20711373
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 432  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||    
T  20711326 ggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtg 20711373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 507
Target Start/End: Original strand, 2219467 - 2219588
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    ||||||||| | ||||||||||||||| ||| |  || ||||||||   || |||| || |||||| |||||||| |||||||||||||  |||   |||    
T  2219467 ggaaaatagtgatttgttcaaattctgttac-caacaatgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaa 2219565  T
Q  485 caatagtgatatgttcaaattct 507  Q
    |||||  ||||||||||||||||    
T  2219566 caataacgatatgttcaaattct 2219588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 21173837 - 21173923
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaata 471  Q
    |||||||||||| ||||||||||||  ||| ||  | ||| |||| || || |||| || ||||||||||||||| |||||||||||    
T  21173837 ggaaaatagcggattgttcaaattccactatgcaactgtgttataatgccgttatatccgctatttcacaatattttgtactaaata 21173923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 519
Target Start/End: Complemental strand, 32231822 - 32231748
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||||||||||||| ||| ||||||| |  |||   ||||| ||| ||| ||||||||||||||||||||||||    
T  32231822 ctatttcacaatattttgtgctaaataacatatcacagaacactagagatttgttcaaattctgctatgcaatag 32231748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 473
Target Start/End: Complemental strand, 32889062 - 32888968
Alignment:
Q  379 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagc 473  Q
    ||||||||||||| | || ||||||||||||  ||| ||  ||| | ||||| | ||| ||||||||||||| |||||| | |||||||||||||    
T  32889062 gatagcggaaaattgtggcttgttcaaattccactatgctacagagttatagcgccgcaatagccactatttgacaatactttgtactaaatagc 32888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 46404621 - 46404695
Alignment:
Q  452 acaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||||||| | |||||||||| | |||||||||||||||  || ||||||||||||| || |  |||||||||||    
T  46404621 acaatattttatactaaatagtgtatcgtggaacaatagatatttgttcaaattctgataggttatagtgttata 46404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 471
Target Start/End: Original strand, 24673366 - 24673451
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaata 471  Q
    |||||||| ||||||||||||||| |||| ||  ||||| ||| ||| |||||||||  |||||| |||| ||| |||||| ||||    
T  24673366 gaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgtactgaata 24673451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 519
Target Start/End: Original strand, 28976499 - 28976580
Alignment:
Q  438 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    |||||||||||||||||||||| ||||||||||     |||||||| |||| |   | ||||||||||| ||||||||||||    
T  28976499 atagccactatttcacaatattatgtactaaatcatatatcgtggaccaatggcagtttgttcaaattccgctatgcaatag 28976580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 32736045 - 32736090
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgt 433  Q
    |||||||||||||||||||||| |||||||  || |||||||||||    
T  32736045 aaatagcggtttgttcaaattccgctacgcaacactgctatagtgt 32736090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 39417828 - 39417759
Alignment:
Q  439 tagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctg 508  Q
    |||||||| ||  |||| ||| ||||||| |||||  |||| |||||||||||||| |||||||||||||    
T  39417828 tagccactgttagacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaattctg 39417759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 5627515 - 5627559
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 432  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||    
T  5627515 aaatagcggtttattcaaattccgctacgcaacagtgctatagtg 5627559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 490
Target Start/End: Original strand, 19130167 - 19130271
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagcc-actatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    |||||||  ||||||||||| ||||||| ||   ||||||||| ||||||| || || | ||||| |||| | | |||||||||||||| || |||||||    
T  19130167 aaaataggagtttgttcaaaatctgctatgctatagtgctataatgtcgctgtaacctattatttgacaacactttgtactaaatagcgtattgtggaac 19130266  T
Q  486 aatag 490  Q
    |||||    
T  19130267 aatag 19130271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 511
Target Start/End: Original strand, 38622870 - 38622946
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 511  Q
    ||||||||| |||||| |||| ||| ||| |||||||| | ||| ||||||||||  ||| | ||||||||||||||    
T  38622870 gctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgcta 38622946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 490
Target Start/End: Complemental strand, 44124658 - 44124546
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||||||||||||||||   ||||| ||||||  || |||   || ||||||| | ||||||| |  |||||| ||||||||||||||||||||| | ||    
T  44124658 ggatagcggaaaatagcatattgttaaaattccactgcgcaatagggctatagcgccgctatatcagctatttgacaatattctgtactaaatagtgtat 44124559  T
Q  478 cgtggaacaatag 490  Q
    ||  |||||||||    
T  44124558 cgcagaacaatag 44124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 385 - 526
Target Start/End: Original strand, 33532432 - 33532573
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||| |   |||||||  || ||| |||| |||||||||||||||||| || ||| ||    
T  33532432 ggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtatagtgtaa 33532531  T
Q  485 caatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||| | ||| ||||||||||||| || || |||||| ||||    
T  33532532 caatggcgatttgttcaaattctgttacgctatagtgctata 33532573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 519
Target Start/End: Original strand, 13427661 - 13427785
Alignment:
Q  395 ggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgat 494  Q
    ||||||||||||||||| || ||   ||||||||| ||  |||| || ||||||||||||||||| |||||||||||  |  || ||||||||||| |||    
T  13427661 ggtttgttcaaattctgttaggcaatagtgctataatgctgctacagtcactatttcacaatattttgtactaaataatgtgtcatggaacaatagcgat 13427760  T
Q  495 atgttcaaattctgctatgcaatag 519  Q
     |||| |||||||||||||||||||    
T  13427761 ttgttgaaattctgctatgcaatag 13427785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 511
Target Start/End: Complemental strand, 431101 - 430975
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    |||||||||| |||  |||||||||||||||||  ||||||||||| |   |||||||| |||||| |||||||| |||||||| |||   ||  |||||    
T  431101 ggaaaatagcagttcattcaaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaatattttgtactaagtagtttataatggaa 431002  T
Q  485 caatagtgatatgttcaaattctgcta 511  Q
    |||||||||| |||||||||| |||||    
T  431001 caatagtgatttgttcaaattttgcta 430975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 505
Target Start/End: Original strand, 1912440 - 1912567
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||| ||||||||||| ||||||||||||||| |||| ||  | ||||||||| ||| |||||| | |||||| |||||| | ||||||||||||   ||    
T  1912440 ggatcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatat 1912539  T
Q  478 cgtggaacaatagtgatatgttcaaatt 505  Q
    ||  ||||||||| ||| ||||||||||    
T  1912540 cgcagaacaatagcgatttgttcaaatt 1912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 30530004 - 30530048
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatag 430  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  30530004 gaaaatagcggtttgttcaaattctgctacgcaacagtgctatag 30530048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 34881775 - 34881705
Alignment:
Q  443 cactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatg 513  Q
    |||||||| |||| | | |||||||||||||| |||||||||| |||||||| |||||| |||| ||||||    
T  34881775 cactatttgacaagactttgtactaaatagcgtatcgtggaacgatagtgatttgttcatattccgctatg 34881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 8600825 - 8600773
Alignment:
Q  363 agtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctac 415  Q
    ||||||||| |||  |||| |||||||||||| ||||||||||||||||||||    
T  8600825 agtgttgttaatcacggattgcggaaaatagcagtttgttcaaattctgctac 8600773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 512
Target Start/End: Original strand, 9742529 - 9742580
Alignment:
Q  461 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 512  Q
    |||||||||| ||| |||| ||||||||| |||| |||||||||||||||||    
T  9742529 tgtactaaatggcgtatcgcggaacaatactgatttgttcaaattctgctat 9742580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 4886323 - 4886289
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgc 417  Q
    |||||||||||| ||||||||||||||||||||||    
T  4886323 gcggaaaatagctgtttgttcaaattctgctacgc 4886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 26327980 - 26327938
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctata 429  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||    
T  26327980 aaaatagtggtttgttcaaattccgctatgcggcagtgctata 26327938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 4886269 - 4886196
Alignment:
Q  446 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||| ||||| || || ||||||||||  |||| |||||||||| ||| |||||||||||  |||||||||||    
T  4886269 tattttacaatgttttgcactaaatagcatatcgcggaacaatagagatttgttcaaattccactatgcaatag 4886196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 19041661 - 19041608
Alignment:
Q  379 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 432  Q
    |||||| ||||||| | |||| |||||||||||||||||  |||||||||||||    
T  19041661 gatagcagaaaataacagtttattcaaattctgctacgctacagtgctatagtg 19041608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 377 - 526
Target Start/End: Original strand, 15255151 - 15255300
Alignment:
Q  377 tggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaa 476  Q
    ||||| || |||||||| |||||||| ||||||||||| ||  || |||||||||| ||||||||||||| |||||||||||| || ||||||||||  |    
T  15255151 tggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgctatagtgccgctatagccactgtttcacaatattatgcactaaatagcata 15255250  T
Q  477 tcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    ||  ||||||  | |||| ||| |||| || |||||||||||||| ||||    
T  15255251 tcacggaacataattgatttgtacaaactccgctatgcaatagtgctata 15255300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 379 - 506
Target Start/End: Original strand, 6025905 - 6026032
Alignment:
Q  379 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatc 478  Q
    |||||| |||||||| || ||||| |||||||||| | |  ||||||||||| |  |||||||||||||||| |||| ||| |||||||||||||  |||    
T  6025905 gatagcagaaaatagtggattgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatc 6026004  T
Q  479 gtggaacaatagtgatatgttcaaattc 506  Q
    | |||||||||   || |||||||||||    
T  6026005 gcggaacaataactatttgttcaaattc 6026032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 519
Target Start/End: Complemental strand, 46937682 - 46937556
Alignment:
Q  384 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgga 483  Q
    |||||||||||||||||||||||||| |||| ||  ||||| ||||| |         |||||||||||||||||| |||||||||||||| |||| |||    
T  46937682 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcg---------ccactatttcacaatattttgtactaaatagcgcatcgcgga 46937592  T
Q  484 acaatagtgatatgttcaaattctgctatgcaatag 519  Q
    |||||||   | ||||||||||| |||| |||||||    
T  46937591 acaatagcactttgttcaaattccgctaagcaatag 46937556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 7347762 - 7347672
Alignment:
Q  436 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||||||| ||||||||||||||| |||||||||||| | || |   ||||||||  || |||||||||||||||||||||||| ||||||    
T  7347762 ctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagcgttata 7347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 519
Target Start/End: Original strand, 43391477 - 43391609
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaaca 486  Q
    |||||||| |||||||  | |||||||| ||  |||||||||||    ||||||||| | |||| |||| ||| |||||||||||| | |||| ||||||    
T  43391477 aaaatagcagtttgtttgagttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcggggaaca 43391576  T
Q  487 atagtgatatgttcaaattctgctatgcaatag 519  Q
    |||| ||| |||||||||||||| |||| ||||    
T  43391577 atagcgatttgttcaaattctgccatgctatag 43391609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 507
Target Start/End: Complemental strand, 3950742 - 3950671
Alignment:
Q  436 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattct 507  Q
    |||||||  |||||||||| ||||  ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  3950742 ctatagcagctatttcacattatttggtactaaatagcgtatcgcggaacaatagtgatttgttcaaattct 3950671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 526
Target Start/End: Complemental strand, 35220869 - 35220778
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||||||| |||||||||||||||| ||||||| ||| || || | |||||||| |  || |||||| ||||||||||||| ||||||||||    
T  35220869 gctatagcaactatttcacaatattttgtactagataacgtattgcggaacaattgctatttgttcagattctgctatgcagtagtgttata 35220778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 484
Target Start/End: Original strand, 17484572 - 17484678
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    ||||||| |||||||| | ||||||||||||| |||| ||  || ||||||||||||||||||||  |  ||||||||||||  |||||| |||| | ||    
T  17484572 ggatagcagaaaatagagatttgttcaaattccgctaagcaacactgctatagtgtcgctatagctgccgtttcacaatatttggtactagatagtgtat 17484671  T
Q  478 cgtggaa 484  Q
    |||||||    
T  17484672 cgtggaa 17484678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 519
Target Start/End: Complemental strand, 7991635 - 7991504
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaa 487  Q
    |||||||||||||||  |||||  ||| ||  || |||||||| | | || ||||  ||||||||||||||| |||||||||| ||| |||  |||||||    
T  7991635 aaatagcggtttgttataattccactaagcaacactgctatagcgccactctagctgctatttcacaatattatgtactaaatggcgtatcacggaacaa 7991536  T
Q  488 tagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||| | ||||||||||  || |||||||||    
T  7991535 tagtggtttgttcaaatttcgcaatgcaatag 7991504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 8856870 - 8856784
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcg 474  Q
    ||||||||||||||||||||||  ||||    ||||||||||||| |||||||||  |||||| |||| | |||||||| |||||||    
T  8856870 aaatagcggtttgttcaaattccactacaatacagtgctatagtgccgctatagcttctatttgacaacactctgtactgaatagcg 8856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 52195694 - 52195632
Alignment:
Q  380 atagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagc 442  Q
    ||||||||||||| ||||||||| ||||||| |||| || ||||||||||| | |||||||||    
T  52195694 atagcggaaaataacggtttgttaaaattctactacacgacagtgctatagcgccgctatagc 52195632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 49825917 - 49825844
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    ||||||||||||||| |||||||||||| | || |  ||||||||||| | |  ||||||||||||||||||||    
T  49825917 ctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgttttagtcaaattctgctatgcaata 49825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 3240549 - 3240470
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgc 514  Q
    ||||||||| |||||| |||| ||| | || ||||||||| ||||   |||||||||||| ||||||| |||||||||||    
T  3240549 gctatagcctctatttgacaacattgtttaataaatagcgtatcgcaaaacaatagtgatttgttcaagttctgctatgc 3240470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 519
Target Start/End: Original strand, 7600420 - 7600550
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    |||||||| | ||||||||||||||||||| |   |||||||||| | | ||||||| || |||||||| || | |||||||   |||| ||||||||||    
T  7600420 gaaaatagtgttttgttcaaattctgctacacaatagtgctatagcgccactatagcaacaatttcacagtaatttgtacta---agcgtatcgtggaac 7600516  T
Q  486 aatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||  ||| |||| ||||||   ||||||||||    
T  7600517 aataaagatttgttaaaattccattatgcaatag 7600550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 519
Target Start/End: Complemental strand, 8344626 - 8344563
Alignment:
Q  456 tattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    |||| |||||||||||||  || |||||| ||||||| | ||||||||||||||||||| ||||    
T  8344626 tattttgtactaaatagcttattgtggaaaaatagtggtttgttcaaattctgctatgctatag 8344563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 526
Target Start/End: Complemental strand, 24808470 - 24808328
Alignment:
Q  384 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgga 483  Q
    ||||||| || |||||||||||||||||||| ||  ||||||| |||    |||||  ||| ||||| |||| | | || |||||||| |  |||| |||    
T  24808470 cggaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacactttgaactaaataccatatcgcgga 24808371  T
Q  484 acaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    | |||||| || |||||||||||||| |||  |||||||||||    
T  24808370 ataatagtaatttgttcaaattctgcaatggtatagtgttata 24808328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 17797712 - 17797624
Alignment:
Q  386 gaaaatagcggtttgttcaaa-ttctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcg 474  Q
    ||||||||||||||||||||| |||| ||||||  || | | ||||   |||||||||||||||| ||||||||| | ||||||||||||    
T  17797712 gaaaatagcggtttgttcaaaattct-ctacgcaacactaccatagcaccgctatagccactattgcacaatattttctactaaatagcg 17797624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 509
Target Start/End: Original strand, 22925211 - 22925323
Alignment:
Q  397 tttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatat 496  Q
    |||||||||||||||||||||   | |||||||| |  ||||||||  ||| || |||||| | |||| || ||  || ||||||||||||||||| | |    
T  22925211 tttgttcaaattctgctacgctatattgctatagagctgctatagctgctacttgacaatactttgtattagattacgtatcgtggaacaatagtggttt 22925310  T
Q  497 gttcaaattctgc 509  Q
    ||| |||||||||    
T  22925311 gttaaaattctgc 22925323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 32434869 - 32434937
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa 455  Q
    ||||||| |||||||||||||| ||| || | |||||||| || ||| ||||||||| |||||| ||||    
T  32434869 aaaatagtggtttgttcaaattttgcaacacagcagtgctttattgttgctatagccgctatttaacaa 32434937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 47847980 - 47848051
Alignment:
Q  434 cgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattc 506  Q
    |||||||||| |||||| |||| ||| ||||| |||| ||  ||||||||||||||| ||| |||||||||||    
T  47847980 cgctatagccgctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaattc 47848051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 41846717 - 41846809
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaat 470  Q
    |||||||  |||| ||||||||| ||||||||||||| || |||||||||||| | |||||||| ||| ||||||||||||| ||||||||||    
T  41846717 ggatagcaaaaaacagcggtttgctcaaattctgctatgcagcagtgctatagcgccgctatagtcaccatttcacaatattttgtactaaat 41846809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 511
Target Start/End: Original strand, 16214052 - 16214178
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    ||||||||||||  ||||||||||| |||| || ||||| |||||| || ||||||| |||||||| |||| ||| |||||||||| ||| ||| |||||    
T  16214052 ggaaaatagcggcatgttcaaattccgctaggcagcagtactatagcgttgctatagtcactatttgacaacattatgtactaaattgcgtatcatggaa 16214151  T
Q  485 caatagtgatatgttcaaattctgcta 511  Q
    ||| || |||  |||||||||| ||||    
T  16214152 caacagcgattagttcaaattccgcta 16214178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 522
Target Start/End: Original strand, 42217632 - 42217718
Alignment:
Q  436 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgt 522  Q
    |||||||||||||||||||||||| |||||||| ||||| ||| | | || | |||||| |||||||||||  ||||||||||||||    
T  42217632 ctatagccactatttcacaatattttgtactaagtagcgtatcattggacgacagtgatttgttcaaattccactatgcaatagtgt 42217718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 519
Target Start/End: Complemental strand, 10440350 - 10440209
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||| ||||||||||| || |||||||||||| ||||||| ||||||  |||| |||||||||||   |  |  |||||||| | | |||||||||| ||    
T  10440350 ggatcgcggaaaatagtggattgttcaaattcggctacgcagcagtgtgatagcgtcgctatagctggttctgtacaatattatctgctaaatagcgtat 10440251  T
Q  478 cgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    ||||||| ||||| ||  ||||||||||| | ||||||||||    
T  10440250 cgtggaataatagcgacttgttcaaattcggttatgcaatag 10440209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 517
Target Start/End: Original strand, 9634890 - 9635020
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    |||||||||||||||||||||||| |||||||  || |||||||| | ||||||||   |||||||| |||||| | ||| |||||| | || | |||||    
T  9634890 gaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctatagttgctatttcaaaatattttatacaaaatagtgtat-gcggaac 9634988  T
Q  486 aatagtgatatgttcaaattctgctatgcaat 517  Q
    |||||  || ||||||||||| |||| |||||    
T  9634989 aatagccatttgttcaaattccgctaagcaat 9635020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 27725567 - 27725501
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 511  Q
    |||||| |||||||| |||||||||||| | || | |||||||| ||||| ||||||||||||||||    
T  27725567 ctatttgacaatattttgtactaaatagtggattgcggaacaattgtgatttgttcaaattctgcta 27725501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 33534632 - 33534685
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctat 439  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||  |||||||    
T  33534632 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctat 33534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 514
Target Start/End: Complemental strand, 6926446 - 6926331
Alignment:
Q  399 tgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa-tattctgtactaaatagcgaatcgtggaacaatagtgatatg 497  Q
    ||||||| ||||||||| |  | ||||||||| |  |||| || ||||||||||||| |||| |||||||||||||  || || |||| ||| |||| ||    
T  6926446 tgttcaagttctgctactcaactgtgctatagcgctgctagagtcactatttcacaaatatt-tgtactaaatagcatattgtagaacgataatgatttg 6926348  T
Q  498 ttcaaattctgctatgc 514  Q
    |||||||||||||||||    
T  6926347 ttcaaattctgctatgc 6926331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 8928401 - 8928473
Alignment:
Q  446 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    ||||||| |||||| |||||||||||||| ||| | ||||||||| ||| ||||||||| | |||| ||||||    
T  8928401 tatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaatcccgctacgcaata 8928473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 11709522 - 11709459
Alignment:
Q  396 gtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatatt 459  Q
    |||||||||||||| | ||| |  ||||||||||||| | ||||||||||||||||| ||||||    
T  11709522 gtttgttcaaattccgatacacaacagtgctatagtggctctatagccactatttcataatatt 11709459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 31632209 - 31632320
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 482  Q
    |||||||||||| ||||||||||| || ||||| |  || ||||||||   | | ||| || ||||||| |||||||  ||||||||||||| |||| ||    
T  31632209 gcggaaaatagcagtttgttcaaactcggctacacaacaatgctatagcacctccataaccgctatttcgcaatattacgtactaaatagcgtatcgggg 31632308  T
Q  483 aacaatagtgat 494  Q
    |||| |||||||    
T  31632309 aacagtagtgat 31632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 512
Target Start/End: Complemental strand, 34114411 - 34114360
Alignment:
Q  461 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 512  Q
    |||||||||||||| || |||||||||||| ||| ||||||| |||||||||    
T  34114411 tgtactaaatagcgtattgtggaacaatagcgatttgttcaagttctgctat 34114360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 42251599 - 42251677
Alignment:
Q  387 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtac 465  Q
    |||||||| ||||| ||||||||||| | ||  | ||||||| |||||||||||| ||| |||||||||| || |||||    
T  42251599 aaaatagcagtttgctcaaattctgcgatgcaactgtgctattgtgtcgctatagtcaccatttcacaatgttttgtac 42251677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 472
Target Start/End: Original strand, 42253908 - 42253990
Alignment:
Q  390 atagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 472  Q
    ||||| ||||| ||||||||||  ||||  |||| |||| ||| |||||||| ||| |||||||||| || ||||||||||||    
T  42253908 atagcagtttgctcaaattctgtgacgcaacagttctattgtgccgctatagtcaccatttcacaatgttttgtactaaatag 42253990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 502
Target Start/End: Original strand, 40213830 - 40213946
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 484  Q
    ||||||||| |||||||| ||||| ||||||||  |||||||||||   |  |||||| || |||| |||| ||| ||||||| |||||| || |  |||    
T  40213830 ggaaaatagtggtttgtttaaattttgctacgcaacagtgctatagcaccaatatagctaccatttgacaacattttgtactacatagcgtattg-cgaa 40213928  T
Q  485 caatagtgatatgttcaa 502  Q
    |||||||||| |||||||    
T  40213929 caatagtgatttgttcaa 40213946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 6586646 - 6586614
Alignment:
Q  377 tggatagcggaaaatagcggtttgttcaaattc 409  Q
    ||||| |||||||||||||||||||||||||||    
T  6586646 tggattgcggaaaatagcggtttgttcaaattc 6586614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 525
Target Start/End: Complemental strand, 36060389 - 36060245
Alignment:
Q  384 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccac---tatttcacaatattctgtactaaatagcgaatcgt 480  Q
    |||||||||| |||||||||||||| ||||| ||  |||| |||||| | |  ||||||| |   |||||||||||||| ||||||||||| || || ||    
T  36060389 cggaaaatagtggtttgttcaaattttgctatgcaacagtactatagcgcctatatagccgcctctatttcacaatattttgtactaaataacgtattgt 36060290  T
Q  481 ggaacaatagtgatatgttcaaattctgctatgcaatagtgttat 525  Q
    |||||||  | ||| |||||||||||||| ||||||||| |||||    
T  36060289 ggaacaaatgcgatttgttcaaattctgcaatgcaatagagttat 36060245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 519
Target Start/End: Complemental strand, 5033453 - 5033317
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 482  Q
    |||||||||||| |||||||||||||| |||||||  ||  ||||||| | | ||||| |  | ||||||| ||||| |||||||||||| | |||  ||    
T  5033453 gcggaaaatagcagtttgttcaaattccgctacgcaacacagctatagcgccactataactgcaatttcacgatattatgtactaaatagtgtatcacgg 5033354  T
Q  483 aacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    |||||||||  | ||||||||||  ||||||||||||    
T  5033353 aacaatagttgtttgttcaaatttcgctatgcaatag 5033317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 505
Target Start/End: Complemental strand, 7877884 - 7877774
Alignment:
Q  395 ggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgat 494  Q
    |||||||||||||||  |||| |  ||||||||||| ||| | |||||| |||||| | || |  ||||||||||||||| || ||||||||||||||||    
T  7877884 ggtttgttcaaattccactacactacagtgctatagcgtcccaatagcctctatttgataacaaactgtactaaatagcgtattgtggaacaatagtgat 7877785  T
Q  495 atgttcaaatt 505  Q
     ||||| ||||    
T  7877784 ttgttccaatt 7877774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 2082120 - 2082056
Alignment:
Q  385 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatt 449  Q
    ||||||||||||||||||||||||||||||| |  | |||||||||||  ||| |||||||||||    
T  2082120 ggaaaatagcggtttgttcaaattctgctacactactgtgctatagtgctgctttagccactatt 2082056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 507
Target Start/End: Complemental strand, 29208328 - 29208263
Alignment:
Q  442 ccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattct 507  Q
    ||||||||||| || ||| ||||||||| |||| ||||||||||||||  ||| ||||||||||||    
T  29208328 ccactatttcaaaacattttgtactaaacagcgtatcgtggaacaataacgatttgttcaaattct 29208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 518
Target Start/End: Complemental strand, 162970 - 162890
Alignment:
Q  438 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    |||||| ||||||||||||||| |||||||||||||| ||||  ||| ||||   || ||||||||||||| | |||||||    
T  162970 atagcctctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattctgttttgcaata 162890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 2990979 - 2991043
Alignment:
Q  441 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaatt 505  Q
    |||||||||| |||| ||| |||||||||||||| |||||||||||| ||  || ||||||||||    
T  2990979 gccactatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 21011408 - 21011361
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatag 430  Q
    |||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  21011408 gcggaaaatagcggtttgttcaaactctgctacacgatagtgctatag 21011361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 54084369 - 54084291
Alignment:
Q  448 tttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    |||||||||||| || ||||||||||| || |||||||| ||    | ||||||||||| |||||||||||||| ||||    
T  54084369 tttcacaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatagtgctata 54084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 7277106 - 7277069
Alignment:
Q  481 ggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  7277106 ggaacaatagtgatttgttcaaattccgctatgcaata 7277069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 14794295 - 14794336
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaaca 486  Q
    |||||| |||||||| |||||||||||||| |||||||||||    
T  14794295 ctatttgacaatattttgtactaaatagcgtatcgtggaaca 14794336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 50061821 - 50061906
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagc 473  Q
    |||| ||||||||||||||||| ||||| |   |||||||||||   |||||||||  || ||||| |||||| ||||||||||||    
T  50061821 aaattgcggtttgttcaaattccgctacacaatagtgctatagtactgctatagccggtacttcaccatattcggtactaaatagc 50061906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 509
Target Start/End: Complemental strand, 43381260 - 43381172
Alignment:
Q  421 agtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgc 509  Q
    |||| |||||||||||||||||  |||||| |||| ||| |||| ||||| ||  |||| |||| ||||| ||| | ||||||||||||    
T  43381260 agtgatatagtgtcgctatagcttctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaattctgc 43381172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 11530108 - 11530018
Alignment:
Q  426 tatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaa 516  Q
    ||||||| | |||||||| ||||||||||||||| |||||||||||| | ||||  ||||||||||||| ||||||||||  |||||||||    
T  11530108 tatagtgccactatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgctatgcaa 11530018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 516
Target Start/End: Complemental strand, 39597637 - 39597566
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaa 516  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||| ||| | || |||||| |||| ||||    
T  39597637 ctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgcaa 39597566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 28804415 - 28804329
Alignment:
Q  426 tatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 512  Q
    ||||||||| ||||||||  ||||| |||||| | |||||||||||||  ||  || |||||||| ||| |||||||||||||||||    
T  28804415 tatagtgtcactatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaattctgctat 28804329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 16866716 - 16866663
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctat 439  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||  |||||||    
T  16866716 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctat 16866663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 39597702 - 39597642
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaatt 505  Q
    ||||||||||||||| ||| |||||||| | || |||||||||||||||| | ||||||||    
T  39597702 ctatttcacaatattttgtcctaaatagtgtattgtggaacaatagtgatttattcaaatt 39597642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 18264879 - 18264808
Alignment:
Q  435 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattc 506  Q
    ||||||||||||||||  ||||||| |||||||||||  | || ||| |||||| ||||| |||||||||||    
T  18264879 gctatagccactatttagcaatattttgtactaaatattgtatagtgcaacaatggtgatttgttcaaattc 18264808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 33623691 - 33623741
Alignment:
Q  461 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 511  Q
    |||||||||||||  || |||||||||||||||| |||| |||||||||||    
T  33623691 tgtactaaatagcatatagtggaacaatagtgatttgttaaaattctgcta 33623741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 35921571 - 35921517
Alignment:
Q  436 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatag 490  Q
    ||||| |||||||||||||| ||| | ||||||| |||| |||||||||||||||    
T  35921571 ctatatccactatttcacaacattttatactaaacagcgtatcgtggaacaatag 35921517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 512
Target Start/End: Complemental strand, 42035571 - 42035506
Alignment:
Q  446 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 512  Q
    ||||| ||||||||  ||||||||||| | ||||||||||| ||||||| ||||||||||| |||||    
T  42035571 tatttgacaatatttagtactaaatag-gtatcgtggaacagtagtgatttgttcaaattccgctat 42035506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 18569542 - 18569497
Alignment:
Q  383 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctat 428  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||    
T  18569542 gcgggaaatagcggtttgttcaaattctgctacactacagtgctat 18569497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 386 - 511
Target Start/End: Complemental strand, 1310249 - 1310124
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 485  Q
    |||||||| |||||||||| ||  ||||| ||  ||||||||||   ||||||||||| ||||||||||||||  |||||||||||| | |||  |||||    
T  1310249 gaaaatagtggtttgttcatatcatgctatgcaacagtgctatacaatcgctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaac 1310150  T
Q  486 aatagtgatatgttcaaattctgcta 511  Q
    |||||  || ||||||||||||||||    
T  1310149 aatagcaatttgttcaaattctgcta 1310124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 42822711 - 42822618
Alignment:
Q  379 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 472  Q
    |||||||||||||| | ||||||||||||||  ||| ||  ||||||||||| | ||||||||||||||||||||| |||| ||| ||||||||    
T  42822711 gatagcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctatagccactatttcacagtattttgtcctaaatag 42822618  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 518
Target Start/End: Complemental strand, 9112482 - 9112405
Alignment:
Q  441 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 518  Q
    |||||||||||||||||||||||||||||||||  ||||  ||||||||||||| || | ||||||  ||||||||||    
T  9112482 gccactatttcacaatattctgtactaaatagcatatcgcagaacaatagtgatctggttaaattccactatgcaata 9112405  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 10354756 - 10354883
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    |||| |||||||||||  ||||||||||||||  ||||||   |||||||||| | ||||||| |   ||||||| |||||| ||| |||||||| | ||    
T  10354756 ggatcgcggaaaatagatgtttgttcaaattccactacgcaatagtgctatagagccgctataactgttatttcataatattttgtgctaaatag-gtat 10354854  T
Q  478 cgtggaacaatagtgatatgttcaaattc 506  Q
    ||||||||||| ||||| |||||||||||    
T  10354855 cgtggaacaatggtgatttgttcaaattc 10354883  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 2722146 - 2722232
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 472  Q
    |||||||||| |||| ||||||||||| ||||   ||||||||||  |||| ||||||||||||  |||||||| ||||||||||||    
T  2722146 gaaaatagcgatttgatcaaattctgcaacgcaaaagtgctatagcatcgcaatagccactattcgacaatattttgtactaaatag 2722232  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 7108314 - 7108228
Alignment:
Q  363 agtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatt 449  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||| ||| ||  |  |||||||||| | ||||||| ||||||    
T  7108314 agtgttgttaatcgtggatagcggaaaatagcagtttgttcaaattctactatgcaacgatgctatagtgccactatagcaactatt 7108228  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 519
Target Start/End: Original strand, 16900883 - 16901018
Alignment:
Q  384 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgcta-tagccactatttcacaatattctgtactaaatagcgaatcgtgg 482  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||| ||||   || || |||| ||| |||||||||||| |  |    |    
T  16900883 cggaaaatagcggtttgctcaaattctgctacgcacgagtgctatagcgccgctattagctggtactt-acaaaattttgtactaaatagtgtttaacag 16900981  T
Q  483 aacaatagtgatatgttcaaattctgctatgcaatag 519  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  16900982 aacaatagtgatttgttcaaattccgctatgcaatag 16901018  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 43935150 - 43935226
Alignment:
Q  445 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 521  Q
    ||||||||||||||| ||| ||||| |||| |||  ||||||||||| || |||||||||||  |||||||||||||    
T  43935150 ctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattccactatgcaatagtg 43935226  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 519
Target Start/End: Complemental strand, 21227052 - 21226911
Alignment:
Q  378 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 477  Q
    ||||||||||||||||||| ||  ||||||||||||  ||  ||||| ||||| |   |||||||  |||||| |||| ||| |||||| ||||||| ||    
T  21227052 ggatagcggaaaatagcgggtttctcaaattctgctttgcaacagtgatatagcgctactatagcagctatttgacaacattttgtactgaatagcgtat 21226953  T
Q  478 cgtggaacaatagtgatatgttcaaattctgctatgcaatag 519  Q
     | ||||||||||   | ||||||||||| ||||||| ||||    
T  21226952 ggaggaacaatagctttttgttcaaattccgctatgctatag 21226911  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 513
Target Start/End: Original strand, 30580440 - 30580476
Alignment:
Q  477 tcgtggaacaatagtgatatgttcaaattctgctatg 513  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30580440 tcgtggaacaatagtgatttgttcaaattctgctatg 30580476  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 469
Target Start/End: Original strand, 41686218 - 41686301
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaa 469  Q
    ||||| |||||||||||||||||  |||| ||  ||||||||||  | |||||||||  ||| ||||||||||| |||||||||    
T  41686218 gaaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctatagcagctacttcacaatattttgtactaaa 41686301  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 8284292 - 8284410
Alignment:
Q  388 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaa 487  Q
    ||||||| ||||||||| |||| || |||| |||||| ||||| | | ||||| | |||||   |||| | | ||||||||| |||| |||| |||||||    
T  8284292 aaatagcagtttgttcatattccgcaacgctgcagtgttatagagccactataactactatccaacaacactttgtactaaaaagcgtatcgcggaacaa 8284391  T
Q  488 tagtgatatgttcaaattc 506  Q
    | ||||| |||||||||||    
T  8284392 tggtgatttgttcaaattc 8284410  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 41931132 - 41931066
Alignment:
Q  423 tgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaata 489  Q
    |||||||||| ||||| ||||  | ||| |||||||| |||||||||||||  ||||||||||||||    
T  41931132 tgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 41931066  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 11674088 - 11674048
Alignment:
Q  486 aatagtgatatgttcaaattctgctatgcaatagtgttata 526  Q
    ||||||||| ||||||||||||||||||| |||||| ||||    
T  11674088 aatagtgatttgttcaaattctgctatgctatagtgctata 11674048  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 10620 - 10702
Alignment:
Q  386 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaa 468  Q
    ||||||||||||||||||||||||||||| ||  ||||  |||| || | |||||||| ||| || |||||||| | ||||||    
T  10620 gaaaatagcggtttgttcaaattctgctatgcaacagtattataatgcctctatagcctctactttacaatattttatactaa 10702  T

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