View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_5 (Length: 477)
Name: NF7816_low_5
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 175 - 460
Target Start/End: Original strand, 40548538 - 40548824
Alignment:
| Q |
175 |
gtaataaaatcgtatatggattataaaacactaatattattttattttattttcaatataaacnnnnnnn-taaccaactggtgtattaatgtttatatt |
273 |
Q |
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| T |
40548538 |
gtaataaaatcgtatatggattataaaacactaatattattttattttattttcaatataaacaaaaaaaataaccaactggtgtattaatgtttatatt |
40548637 |
T |
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| Q |
274 |
atttattttttgaaaaaatacgagaagagagatcaattgttttattattaaataaaattaatgattcttttacaatcgtctccaaaatgatttgaattat |
373 |
Q |
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| T |
40548638 |
atttattttttgaaaaaatacgagaagagagatcaattattttattattaaataaaattaatgattcttttacaatcgtctccaagatgatttgaattat |
40548737 |
T |
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| Q |
374 |
ttcccttaatccgaggttatcaaagtaaatctcttatcactaatctataattccattgacattatttcattattgctagtatggcat |
460 |
Q |
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| T |
40548738 |
ttcccttaatccgaggttatcaaagtaaatctcttatcactaatctataattccattgacattatttcattattgctagtatggcat |
40548824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 40548216 - 40548246
Alignment:
| Q |
1 |
gagtgatccagaaattcaattgaaaggggcc |
31 |
Q |
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| T |
40548216 |
gagtgatccagaaattcaattgaaaggggcc |
40548246 |
T |
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