View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_6 (Length: 468)
Name: NF7816_low_6
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 32036582 - 32036136
Alignment:
| Q |
1 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036582 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
32036483 |
T |
|
| Q |
101 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036482 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
32036383 |
T |
|
| Q |
201 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036382 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
32036283 |
T |
|
| Q |
301 |
catgatttggccattgctaaggaacgtcttgctcgttgtcgcgcagttgctgcagctgctacaatcaccaccacaacagctccttctgtgattgatagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036282 |
catgatttggccattgctaaggaacgtcttgctcgttgtcgcgcagttgctgcagctgctacaatcaccaccacaacagctccttctgtgattgatagtt |
32036183 |
T |
|
| Q |
401 |
tgcatcctgatgttactttgcctccatttcctgagttttccacttct |
447 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
32036182 |
tgcattcggatgttactttgcctccatttcctgagttttccacttct |
32036136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 35808949 - 35808612
Alignment:
| Q |
1 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
100 |
Q |
| |
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||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||| || ||||| | || |
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| T |
35808949 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
35808850 |
T |
|
| Q |
101 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||| ||||| || || |
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| T |
35808849 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
35808750 |
T |
|
| Q |
201 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
300 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| ||| | ||||| | ||||||||||||||| | |||||||| |
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| T |
35808749 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaa |
35808650 |
T |
|
| Q |
301 |
catgatttggccattgctaaggaacgtcttgctcgttg |
338 |
Q |
| |
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|||||| | |||||||| ||||| || || |||||||| |
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| T |
35808649 |
catgatcttgccattgcaaaggatcgcctggctcgttg |
35808612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 600801 - 600908
Alignment:
| Q |
124 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
223 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| || || | |||||| | | ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
600801 |
gttcacaaaatatttggtgcaagcaatgttagcaaaattctaaatgaagtcttacctcatcaaagagaagatacagtgaattctctagcttatgaagctg |
600900 |
T |
|
| Q |
224 |
aagcaagg |
231 |
Q |
| |
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|||||||| |
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| T |
600901 |
aagcaagg |
600908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 591284 - 591351
Alignment:
| Q |
184 |
caaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatgg |
251 |
Q |
| |
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||||||||||| || ||||||||||| ||||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
591284 |
caaagagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatgg |
591351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 12360798 - 12360671
Alignment:
| Q |
124 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
223 |
Q |
| |
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||||||||| ||||||| ||||||||||| || || | || | |||||||| | | | ||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
12360798 |
gttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagctg |
12360699 |
T |
|
| Q |
224 |
aagcaaggcttagagacccagtttatgg |
251 |
Q |
| |
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| |||||| | | ||| ||||||||||| |
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| T |
12360698 |
aggcaaggataaaagatccagtttatgg |
12360671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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