View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7816_low_7 (Length: 457)
Name: NF7816_low_7
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7816_low_7 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 24623 - 24205
Alignment:
| Q |
16 |
gttatatcgctttccttcaacaaatcatgaagtaaacgtacacacccaccagagctgagatgaagcaaacacgctgaagaaaccaatctaatgagaagcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24623 |
gttatatcgctttccttcaacaaatcatgaagtaaacgtacacacccaccagagctgagatgaagcaaacacgctgaagaaaccaatctaatgagaagcg |
24524 |
T |
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| Q |
116 |
atgtaaaataattcttcacatccaagtttgannnnnnnatccaggctttggtaccattttgatcatgaaataactcatgcaggatattt-gcaatgaaat |
214 |
Q |
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| T |
24523 |
atgtaaaataattcttcacatccaagtttgatttttttatccaggctttggta----------------ataactcatgcaggatgttttgcaatgaaat |
24440 |
T |
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| Q |
215 |
caaggacaggtttcatgtctgactgttcaacaggcacaaagctcaactttgaaagagaattttcatcctggcaaattagccattcagtgaaagatgactt |
314 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24439 |
caaggacaggttttatgtctgactgtacaacaggcacaaagctcaactttgaaagagaattttcatcctggcaaattagccattcagtgaaagatgactt |
24340 |
T |
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| Q |
315 |
tgttacgtaaatgaaacctttccggtagccgttcaaatgtgatacatacagcagcagccgctcaataagatacataaagcagctgggagacatatagtca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24339 |
tgttacgtaaatgaaacctttccggtagccgttcaaatgtgatacatacagcagcagccgctcaataagatacataaagcagctgggagacatatagtca |
24240 |
T |
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| Q |
415 |
acttcattcatccaattcacccgataagtataatc |
449 |
Q |
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| T |
24239 |
acttcattcatccaattcacccgataagtataatc |
24205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 1219141 - 1219248
Alignment:
| Q |
109 |
agaagcgatgtaaaataattcttcacatccaagtttgannnnnnnatccaggctttggtaccattttgatcatgaaataactcatgcaggatatttgcaa |
208 |
Q |
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| T |
1219141 |
agaagcgatggaaaataattcttcacatcctagtttgattttttaatccaggttttggtaccattttgatcataaacaaactcacggaggatattggcga |
1219240 |
T |
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| Q |
209 |
tgaaatca |
216 |
Q |
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| T |
1219241 |
taaaatca |
1219248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 1219373 - 1219445
Alignment:
| Q |
362 |
acagcagcagccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcac |
434 |
Q |
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| T |
1219373 |
acagcagtagccattcaacaagatacataaagcaatcgggagatatatagtcaacttcctttatccaattcac |
1219445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 1219276 - 1219340
Alignment:
| Q |
253 |
aagctcaactttgaaagagaattttcatcctggcaaattagccattcagtgaaagatgactttgt |
317 |
Q |
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| T |
1219276 |
aagctaaaatttgaaagggaatttgcatcctggcaaataagccactcgatgaaagatgattttgt |
1219340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 434
Target Start/End: Complemental strand, 28403952 - 28403880
Alignment:
| Q |
362 |
acagcagcagccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcac |
434 |
Q |
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| T |
28403952 |
acagcagtagctgttcaacaagatacataaagcaactgggagatatatagtcaacatcctttatccaattcac |
28403880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 28404022 - 28403988
Alignment:
| Q |
283 |
tggcaaattagccattcagtgaaagatgactttgt |
317 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
28404022 |
tggcaaataagccattcagtgaaagatgactttgt |
28403988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 34601761 - 34601819
Alignment:
| Q |
376 |
tcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcac |
434 |
Q |
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|||| ||||||||||||||| |||||||| || ||||||||||| || |||| |||||| |
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| T |
34601761 |
tcaaaaagatacataaagcaactgggagatatgtagtcaacttcctttatccgattcac |
34601819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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