View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7816_low_8 (Length: 437)

Name: NF7816_low_8
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7816_low_8
NF7816_low_8
[»] chr6 (1 HSPs)
chr6 (18-428)||(18357629-18358039)
[»] chr8 (11 HSPs)
chr8 (21-424)||(2991230-2991621)
chr8 (17-428)||(2982142-2982556)
chr8 (18-425)||(2709082-2709498)
chr8 (187-425)||(3004235-3004473)
chr8 (177-424)||(9849067-9849314)
chr8 (19-157)||(3280304-3280442)
chr8 (19-157)||(13793449-13793587)
chr8 (18-77)||(2707828-2707887)
chr8 (115-154)||(2707925-2707964)
chr8 (178-236)||(2707991-2708049)
chr8 (118-154)||(3004509-3004545)
[»] chr1 (1 HSPs)
chr1 (18-425)||(10753477-10753887)
[»] chr7 (1 HSPs)
chr7 (19-77)||(3916952-3917010)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 18358039 - 18357629
Alignment:
Q  18 tggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctga 117  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||  ||||||||||    
T  18358039 tggacagccaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaactttcgcacccgtacaccgcaagatgctga 18357940  T
Q  118 agtgatgagatgttgcatatccaatctggtactgcctctaaatcacaatgtctaatttggattttttggagggaaggatgacaaatgaggtcatctttaa 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||  ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18357939 agtgatgagatgttgcatatccaatctggtaatgcctttaaacgacaagttctaatttggattttttggagggaaggaagacaaatgaggtcatctttaa 18357840  T
Q  218 accacatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaagatttttgaaccaatcctttgggacattttc 317  Q
    ||||||||||||||||||||||| |||||||||||||  ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18357839 accacatttcaattacttcaaattgttgacttgacaaagagtctaagtcaagattctcgagagaagtaagatttttcaaccaatcctttgggacattttc 18357740  T
Q  318 catacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctacatttagtgttgcttcc 417  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18357739 catacccataatggtttcaataatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctatatttagtgttgcttcc 18357640  T
Q  418 aatatctctgc 428  Q
    |||||||||||    
T  18357639 aatatctctgc 18357629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 2991621 - 2991230
Alignment:
Q  21 acatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctgaagt 120  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||  | ||| | ||||||||||||||    
T  2991621 acatccaatgatttctaaggtgtgtaagtttgtaagacgtgacattccttcaggcagatctaccaa---tttgcagcggaacatcttaagatgctgaagt 2991525  T
Q  121 gatgagatgttgcatatccaatctggtactgcctctaaatcacaatgtctaatttggattttttggagggaaggatgacaaatgaggtcatctttaaacc 220  Q
    |||||||| ||||||||||||||||||| |||||  ||| ||||||   |||  | |||| |||||||||||||| || |||||||||||||||||||||    
T  2991524 gatgagattttgcatatccaatctggtaatgccttaaaaccacaataagtaaaattgattgtttggagggaaggaagataaatgaggtcatctttaaacc 2991425  T
Q  221 acatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaagatttttgaaccaatcctttgggacattttccat 320  Q
    |||||||||||||||||||| |||||||||   |||| |  |||  || |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2991424 acatttcaattacttcaaattgttgacttg---acaaactgaagcaaatattctcgagagaagtaagatttttcaaccaatcctttgggacattttccat 2991328  T
Q  321 acccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctacatttagtgttgcttccaat 420  Q
    ||      | ||| ||| ||| |  ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  2991327 ac------tcgttccatcaatttttaaggatttgagcatggaaagaggagggaagccatttgaatattgtgactcttctacatttagtgttgcttccaat 2991234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 2982556 - 2982142
Alignment:
Q  17 atggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctg 116  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |||||  | | ||  || |||||  ||  || ||    
T  2982556 atggacattcaatgatttctaaggtatgtaagtttgtaagacgtggcattgcctcaggcagatcttccaaatctctacaaccgcacacctcaatgtgttg 2982457  T
Q  117 aagtgatgagatgttgcatatccaatctggtactgcctctaaatcacaatgtctaatttggattttttggagggaaggatgacaaatgaggtcatcttta 216  Q
    |||||||||||||||||||||||||| ||| | ||| | ||  ||||||||   ||    |||||||| |||||||||| ||||  ||||||||||||||    
T  2982456 aagtgatgagatgttgcatatccaatatggcaatgcatttaggtcacaatgaaaaaaagtgatttttttgagggaaggaagacagttgaggtcatcttta 2982357  T
Q  217 aaccac---atttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaagatttttgaaccaatcctttgggacat 313  Q
    ||||||   ||||||||||||| ||||  ||||||||| |  ||| | || ||||||||||| |||||| |||||||||| ||||||||||||||| | |    
T  2982356 aaccaccacatttcaattacttgaaatttttgacttgaaagaaagtaaaattcaagattctcaagagaaataagatttttaaaccaatcctttggggctt 2982257  T
Q  314 tttccatacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctacatttagtgttgc 413  Q
    |||||||||||||||||||  || ||||    ||| ||||||| || |||||||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  2982256 tttccatacccataatggtatcagtaattatcaagaatttgagcatcgaaagaggagggaagccactcgaatatggtgactctgctatatttagtgttgc 2982157  T
Q  414 ttccaatatctctgc 428  Q
    |||||||||||||||    
T  2982156 ttccaatatctctgc 2982142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 2709082 - 2709498
Alignment:
Q  18 tggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctga 117  Q
    |||||||| ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||  | |||| ||   |||| |||||||||||    
T  2709082 tggacatccaatgatttctaaggtatgtaattttgtaaggcgtggcattccgtcaggcagatctaccaaatctctgcattccttcaccttaagatgctga 2709181  T
Q  118 agtgatgagatgttgcatatccaatctggtactgcctctaaatc-------acaatg---tctaatttggattttttggagggaaggatgacaaatgagg 207  Q
    ||||||||||||||||||||||||||||||| ||||| || | |       |||||    || || ||| ||| || |||| |||||| ||||| |||||    
T  2709182 agtgatgagatgttgcatatccaatctggtaatgcctttacaacgtcaccaacaataccctcaaagttg-attgttcggagagaaggaagacaattgagg 2709280  T
Q  208 tcatctttaaaccacatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaagatttttgaaccaatcctttg 307  Q
    | ||||||||||||||||||||||||||  ||   || |||    |  ||| | |||| ||||||||| ||||||||||||||||| ||||||||||| |    
T  2709281 ttatctttaaaccacatttcaattacttgtaagtttttactcataagaaagtaaaagtgaagattctcaagagaagtaagatttttaaaccaatccttcg 2709380  T
Q  308 ggacattttccatacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctacatttag 407  Q
    |  | ||||| ||||||||||||||  ||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  2709381 gagctttttcgatacccataatggtagcattaattttcaaggatttgagcatggaaagaggagggaagccaatcgaatattgtgactctgctatatttag 2709480  T
Q  408 tgttgcttccaatatctc 425  Q
    ||||||||||| ||||||    
T  2709481 tgttgcttccattatctc 2709498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 425
Target Start/End: Complemental strand, 3004473 - 3004235
Alignment:
Q  187 agggaaggatgacaaatgaggtcatctttaaaccacatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaa 286  Q
    ||||||||| || | |||| |||||||||||||||| | ||||||||||||||| |||||||||| |  ||| | || ||||||||||| |||||||| |    
T  3004473 agggaaggaagatagatgaagtcatctttaaaccacgtctcaattacttcaaattgttgacttgaaagaaagaaaaattcaagattctcaagagaagtga 3004374  T
Q  287 gatttttgaaccaatcctttgggacattttccatacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaata 386  Q
    ||||||  ||||||| ||||||||  |||| ||   |   | ||  | |   ||| |  | ||||||||| ||||||||||||||||||||||| |||||    
T  3004373 gattttgcaaccaattctttgggagttttttcacgtctgaactgaattcgccaatttctatggatttgagcatggaaagaggagggaagccaatcgaata 3004274  T
Q  387 ttgtgactctgctacatttagtgttgcttccaatatctc 425  Q
    |||||||  ||||| ||||||||||||||||||||||||    
T  3004273 ttgtgacattgctatatttagtgttgcttccaatatctc 3004235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 177 - 424
Target Start/End: Original strand, 9849067 - 9849314
Alignment:
Q  177 gattttttggagggaaggatgacaaatgaggtcatctttaaaccacatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcg 276  Q
    |||| ||||||| |||||| | ||| ||||| ||||||||||||||||||||||||||| |||  ||| |||||| |  ||| | || |||||||||||     
T  9849067 gattgtttggagagaaggaaggcaattgaggccatctttaaaccacatttcaattacttgaaactgttcacttgaaacaaagtaaaaatcaagattctca 9849166  T
Q  277 agagaagtaagatttttgaaccaatcctttgggacattttccatacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagc 376  Q
    ||||| || |||||||  |||||||| |||||||  |||| || | ||  | ||  | |   ||| |  | ||||||||| |||||||||||||||||||    
T  9849167 agagatgtgagattttgcaaccaatcttttgggagttttttcacatccgaactgacttcgccaatttccatggatttgagcatggaaagaggagggaagc 9849266  T
Q  377 caattgaatattgtgactctgctacatttagtgttgcttccaatatct 424  Q
    || | ||||||||||||  ||||| |||||||||||||||||||||||    
T  9849267 cagtcgaatattgtgacattgctatatttagtgttgcttccaatatct 9849314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 3280304 - 3280442
Alignment:
Q  19 ggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctgaa 118  Q
    ||||||| ||||||||||| ||| |||||||| || ||||| |||||||||||||||||   | ||||| || |||| ||  ||||| ||||||||||||    
T  3280304 ggacatccaatgatttctatggtctgtaagttagttagacggggcattccttcaggcagtgatgccaaatttatgcaatcatacaccctaagatgctgaa 3280403  T
Q  119 gtgatgagatgttgcatatccaatctggtactgcctcta 157  Q
    |||||||||  ||||||||||||||||| | ||||||||    
T  3280404 gtgatgagagattgcatatccaatctggcaatgcctcta 3280442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 13793587 - 13793449
Alignment:
Q  19 ggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctgaa 118  Q
    |||||||  |||||||||| ||| |||||||| || |||    ||||||||||||||||   | ||||| || |||||||  ||||| ||||||||||||    
T  13793587 ggacatccgatgatttctagggtctgtaagttggttagattgagcattccttcaggcagtgatgccaaatttatgcagtcatacaccctaagatgctgaa 13793488  T
Q  119 gtgatgagatgttgcatatccaatctggtactgcctcta 157  Q
    | ||||||| ||||||||||||||| || | ||||||||    
T  13793487 gcgatgagaggttgcatatccaatccggcaatgcctcta 13793449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2707828 - 2707887
Alignment:
Q  18 tggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcag 77  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  2707828 tggacaactattgatttctaaggtatgtaagtttgtaagacgtgtcattccatcaggcag 2707887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 2707925 - 2707964
Alignment:
Q  115 tgaagtgatgagatgttgcatatccaatctggtactgcct 154  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  2707925 tgaagtgatgagatgttgcatatccaatctggtaatgcct 2707964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 2707991 - 2708049
Alignment:
Q  178 attttttggagggaaggatgacaaatgaggtcatctttaaaccacatttcaattacttc 236  Q
    ||||| |||| ||||||| ||||  |||| |||| ||||||||||||||||||||||||    
T  2707991 attttgtggatggaaggaagacagttgagctcatttttaaaccacatttcaattacttc 2708049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 3004545 - 3004509
Alignment:
Q  118 agtgatgagatgttgcatatccaatctggtactgcct 154  Q
    |||||||||| |||||||||||||||||||| |||||    
T  3004545 agtgatgagaggttgcatatccaatctggtaatgcct 3004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 10753477 - 10753887
Alignment:
Q  18 tggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcagatctaccaaacttttgcagtcggacaccataagatgctga 117  Q
    |||||||  ||||||||||||||| | |||||| |||||||| |||||| ||| ||||||   | |||||  | |||| | | ||||| |||||||||||    
T  10753477 tggacattcaatgatttctaaggtttttaagttggtaagacgaggcatttctttaggcagcaatgccaaatatctgcaatggtacaccgtaagatgctga 10753576  T
Q  118 agtgatgagatgttgcatatccaatctggtactgcctctaaatcacaatgtc---taatttggattttttggagggaaggatgacaaatgaggtcatctt 214  Q
    ||||||||||||||||||||||||||||||| | |||  |  ||| ||   |   ||| |  |||||||||||||||| || ||||| || |||||| ||    
T  10753577 agtgatgagatgttgcatatccaatctggtaattccttaaggtcagaacaccatgtaaatgtgattttttggagggaacgaagacaattggggtcatttt 10753676  T
Q  215 taaaccacatttcaattacttcaaatcgttgacttgacaacaagcataagtcaagattctcgagagaagtaagatttttgaaccaatcctttgggacatt 314  Q
    ||||||||||||||||||||| ||||| ||||||||| |    |   |||||||||| ||||||||||||||||||||| ||||||||||| ||  | ||    
T  10753677 taaaccacatttcaattacttgaaatccttgacttgaaagattgtcaaagtcaagatcctcgagagaagtaagatttttaaaccaatccttcggagcttt 10753776  T
Q  315 ttccatacccataatggttacattaatatggaaggatttgagtatggaaagaggagggaagccaattgaatattgtgactctgctacatttagtgttgct 414  Q
    ||||||||||||||||||| ||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  10753777 ttccatacccataatggtttcattaattttcaaggatttgagcatggaaagaggagggaagccaatcgaatattgtgactctgctatatttagtgttgct 10753876  T
Q  415 tccaatatctc 425  Q
    |||||||||||    
T  10753877 tccaatatctc 10753887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 3916952 - 3917010
Alignment:
Q  19 ggacatctaatgatttctaaggtgtgtaagtttgtaagacgtggcattccttcaggcag 77  Q
    ||||||| ||||||||||| ||| ||||| || | |||||||||||||||||| |||||    
T  3916952 ggacatcgaatgatttctagggtctgtaatttggcaagacgtggcattccttcgggcag 3917010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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