View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7816_low_9 (Length: 427)

Name: NF7816_low_9
Description: NF7816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7816_low_9
NF7816_low_9
[»] chr4 (10 HSPs)
chr4 (9-411)||(24985999-24986401)
chr4 (9-340)||(25000762-25001091)
chr4 (4-271)||(25046542-25046809)
chr4 (26-98)||(25168726-25168798)
chr4 (26-98)||(25252468-25252540)
chr4 (17-99)||(25160164-25160246)
chr4 (17-100)||(25180392-25180475)
chr4 (26-97)||(25189340-25189411)
chr4 (9-90)||(25017633-25017714)
chr4 (9-90)||(25038740-25038821)
[»] chr3 (2 HSPs)
chr3 (26-100)||(9213708-9213782)
chr3 (29-95)||(8091587-8091653)
[»] chr2 (1 HSPs)
chr2 (10-95)||(42167210-42167295)
[»] chr8 (1 HSPs)
chr8 (155-206)||(4633222-4633273)
[»] chr6 (2 HSPs)
chr6 (26-98)||(29406212-29406284)
chr6 (50-98)||(29460043-29460091)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 24986401 - 24985999
Alignment:
Q  9 gcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagtgtgagcat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986401 gcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagtgtgagcat 24986302  T
Q  109 gaatgcttatgcatatggaaagtttgcaccgggtcgatgttcagattggttaaatctgaattgcacaggaggcgattcagggaccgaaccatatttgact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24986301 gaatgcttatgcatatggaaagtttgcaccgggtcgatgttcagattggttaaatctgaattgcacaggaggcgattcagggaccgagccatatttgact 24986202  T
Q  209 gcacactaccaacttcttgctcatgctgctgctacaaaactatacaagaccaaatatcaggtcttctgtttttaaaagcaaaatattattcaaattcggc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  24986201 gcacactaccaacttcttgctcatgctgctgctacaaaactatacaagaccaaatatcaggttttctgtttttaaaagaaaaatattattcaaattcggc 24986102  T
Q  309 actgaaatctttatgtcctgaaattcaaataacatgagacttgatcttctgtaatagaagggaaagtcggacaaaagcatacacaattgctttcttttga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986101 actgaaatctttatgtcctgaaattcaaataacatgagacttgatcttctgtaatagaagggaaagtcggacaaaagcatacacaattgctttcttttga 24986002  T
Q  409 tag 411  Q
    |||    
T  24986001 tag 24985999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 25000762 - 25001091
Alignment:
Q  9 gcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagtgtgagcat 108  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25000762 gcagagatgattttagggactatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatgaaccatggagtgtgagcat 25000861  T
Q  109 gaatgcttatgcatatggaaagtttgcaccgggtcgatgttcagattggttaaatctgaattgcacaggaggcgattcagggaccgaaccatatttgact 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||    
T  25000862 gaatgcttatgcatatggaaagtttgcaccgggtcgatgttcagattggttaaatctgaattgcacaggtggtgattcagggaccgaaccatatttggct 25000961  T
Q  209 gcacactaccaacttcttgctcatgctgctgctacaaaactatacaagaccaaatatcaggtcttctgtttttaaaagcaaaatattattcaaattcggc 308  Q
    ||||||||||||||||| |||||||||||||||  |||||| |||  ||||||||||||||||  ||| |||||||| |||||| ||||||||||||||     
T  25000962 gcacactaccaacttctcgctcatgctgctgctgtaaaactgtaccggaccaaatatcaggtccgctg-ttttaaaaccaaaatgttattcaaattcgga 25001060  T
Q  309 actgaaatctttatgtcctgaaattcaaataa 340  Q
    |||   ||||||||||| ||||||||||||||    
T  25001061 act-tgatctttatgtcttgaaattcaaataa 25001091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 25046809 - 25046542
Alignment:
Q  4 gagtagcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagtgtg 103  Q
    |||| ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  25046809 gagttgcagaaatgattttaaggactatgctgatctttgcttcaaggaatttggtgatagggtgaaacgttggactactttgaatgaaccaaggagtgtg 25046710  T
Q  104 agcatgaatgcttatgcatatggaaagtttgcaccgggtcgatgttcagattggttaaatctgaattgcacaggaggcgattcagggaccgaaccatatt 203  Q
    || | |||||  || |||   |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||     
T  25046709 agtaagaatggatacgcagtcggaaggtttgcaccgggtcgatgttcagattggttaaaactgaattgcacaggaggagattctgggacagaaccatatc 25046610  T
Q  204 tgactgcacactaccaacttcttgctcatgctgctgctacaaaactatacaagaccaaatatcaggtc 271  Q
    ||||| | ||||||||||||||||||||| |||| |||  |||| | ||||||||||| |||||||||    
T  25046609 tgacttcgcactaccaacttcttgctcattctgcagctgtaaaattgtacaagaccaagtatcaggtc 25046542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 25168798 - 25168726
Alignment:
Q  26 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatgga 98  Q
    |||||||| |||||||||| |||   |||||| ||||| || ||||||||||| |||||||||||||||||||    
T  25168798 gactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatgga 25168726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 25252468 - 25252540
Alignment:
Q  26 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatgga 98  Q
    |||||||| |||||||||| |||   |||||| ||||| || ||||||||||| |||||||||||||||||||    
T  25252468 gactatgcggaactttgcttcaaaacatttggagatagagtaaaacattggataactttgaatgaaccatgga 25252540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 25160246 - 25160164
Alignment:
Q  17 gattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggag 99  Q
    |||||| | |||||||| |||||||| | |||||||||||||||||| || ||  ||||| |||||||||| || ||||||||    
T  25160246 gattttcaagactatgcggaactttgtttcaaggaatttggtgatagagtcaagtattgggttactttgaacgagccatggag 25160164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 25180475 - 25180392
Alignment:
Q  17 gattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagt 100  Q
    |||||| | |||||||| ||||||||||  ||   |||||| ||||| || ||||||||||| ||||||||||| |||||||||    
T  25180475 gattttcaagactatgcggaactttgctttaaaacatttggagatagagtaaaacattggataactttgaatgagccatggagt 25180392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 25189411 - 25189340
Alignment:
Q  26 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatgg 97  Q
    ||||||||||| ||||||| |||||||||||| ||||| |||||  | ||| ||||||| || |||||||||    
T  25189411 gactatgctgatctttgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccatgg 25189340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 25017714 - 25017633
Alignment:
Q  9 gcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatga 90  Q
    ||||| |||||||| |||||||||| || || |||| |||||||||||| ||  | ||||| ||||||||||| || |||||    
T  25017714 gcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 25017633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 25038821 - 25038740
Alignment:
Q  9 gcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatga 90  Q
    ||||| |||||||| | |||||||| || || |||| ||||||||| || ||||| ||||| ||||||||||| || |||||    
T  25038821 gcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatga 25038740  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 9213708 - 9213782
Alignment:
Q  26 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatggagt 100  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9213708 gactatgctgaactttgctttaaggagtttggtgatagggtgaaatattgggttactttgaatgaaccatggagt 9213782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 8091587 - 8091653
Alignment:
Q  29 tatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccat 95  Q
    ||||| ||||| |||| ||  ||||||||||| ||||| || ||||||||||| |||||||||||||    
T  8091587 tatgcagaactatgcttcagtgaatttggtgacagggttaagcattggattacattgaatgaaccat 8091653  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 42167295 - 42167210
Alignment:
Q  10 cagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccat 95  Q
    |||| |||||||| | |||||||| |||||||| | ||| || ||||| |||||||||||  ||||||||||||| ||||| ||||    
T  42167295 cagaaatgattttcaagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatgagccat 42167210  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 4633273 - 4633222
Alignment:
Q  155 tggttaaatctgaattgcacaggaggcgattcagggaccgaaccatatttga 206  Q
    ||||||||| ||||||||  |||||| ||||||||||| |||||||||||||    
T  4633273 tggttaaatatgaattgcttaggaggtgattcagggacagaaccatatttga 4633222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 29406212 - 29406284
Alignment:
Q  26 gactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatgaaccatgga 98  Q
    |||||||| || ||||| || |||||||| || ||||||||||| |||||||| || ||||| || |||||||    
T  29406212 gactatgcagagctttgttataaggaattcggagatagggtgaagcattggatcacattgaacgagccatgga 29406284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 29460091 - 29460043
Alignment:
Q  50 gaatttggtgatagggtgaaacattggattactttgaatgaaccatgga 98  Q
    |||||||| |||||||| || |||||||| || ||||||||||||||||    
T  29460091 gaatttggagatagggtaaagcattggatcacattgaatgaaccatgga 29460043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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