View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7817_high_10 (Length: 229)

Name: NF7817_high_10
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7817_high_10
NF7817_high_10
[»] chr5 (13 HSPs)
chr5 (11-223)||(9004274-9004498)
chr5 (98-220)||(2873518-2873640)
chr5 (102-211)||(8637891-8638000)
chr5 (104-215)||(8678746-8678857)
chr5 (98-220)||(2844072-2844194)
chr5 (98-220)||(2855905-2856027)
chr5 (98-211)||(9073723-9073836)
chr5 (107-215)||(8547124-8547232)
chr5 (96-199)||(2904045-2904148)
chr5 (104-207)||(8645238-8645341)
chr5 (98-212)||(1599290-1599404)
chr5 (95-215)||(8529930-8530050)
chr5 (118-214)||(8536523-8536619)
[»] chr7 (2 HSPs)
chr7 (98-215)||(48360840-48360957)
chr7 (97-215)||(35780842-35780960)
[»] scaffold0627 (1 HSPs)
scaffold0627 (99-214)||(5618-5733)
[»] chr6 (1 HSPs)
chr6 (95-215)||(16717327-16717447)
[»] chr4 (1 HSPs)
chr4 (95-215)||(9444091-9444211)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 9004274 - 9004498
Alignment:
Q  11 attgttgcttccaagttcaaaattcttaagctcgcactcgagaagggacaacattcttgcctccggtttatagtcataagtccgaat------------t 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  9004274 attgttgcttccaagttcaaaattcttaagctcgcactcgagaagggacaacattcttgcctccggtttatagtcataagtccgaatcatgagactaatt 9004373  T
Q  99 ggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 198  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9004374 ggtgctcgctcaaattgcaatttagcaaaatgtggttatgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 9004473  T
Q  199 gttgaagcagaatgtggttagtgag 223  Q
    | |||||||||||||||||||||||    
T  9004474 gatgaagcagaatgtggttagtgag 9004498  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2873640 - 2873518
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||| || ||||||||||||||||||    
T  2873640 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtgtattccaagttttgcacacacatctacacatgagaagagacttaatggga 2873541  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    |||||||| ||||||||| ||||    
T  2873540 agttgaagaagaatgtgggtagt 2873518  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 8637891 - 8638000
Alignment:
Q  102 gctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagtt 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  8637891 gctcgctcaaattgcaatttagcaaaatgtggttccgaaatcattgttttccaaatcttgcacacacatttacaaatgagaagagacttaatggaaagtt 8637990  T
Q  202 gaagcagaat 211  Q
    ||||||||||    
T  8637991 gaagcagaat 8638000  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 8678746 - 8678857
Alignment:
Q  104 tcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttga 203  Q
    ||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||    
T  8678746 tcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacatttacaaatgagaagagatttaatgggaagatga 8678845  T
Q  204 agcagaatgtgg 215  Q
    |||| |||||||    
T  8678846 agcaaaatgtgg 8678857  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2844194 - 2844072
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  2844194 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatggga 2844095  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    || |  || ||||||||| ||||    
T  2844094 agctttaggagaatgtgggtagt 2844072  T

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Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2856027 - 2855905
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  2856027 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatggga 2855928  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    || |  || ||||||||| ||||    
T  2855927 agctttaggagaatgtgggtagt 2855905  T

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Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 9073836 - 9073723
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||| ||||||| ||||||| ||| | ||||    
T  9073836 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtcttttccaaattttgcacacacatttacaaatgagaagaggcttgacggga 9073737  T
Q  198 agttgaagcagaat 211  Q
    ||| ||||||||||    
T  9073736 agtcgaagcagaat 9073723  T

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Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 8547232 - 8547124
Alignment:
Q  107 ctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttgaagc 206  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||| |||||| ||||    
T  8547232 ctcaaagtgcaatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgtgaagtttaagc 8547133  T
Q  207 agaatgtgg 215  Q
    |||||||||    
T  8547132 agaatgtgg 8547124  T

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Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 2904148 - 2904045
Alignment:
Q  96 attggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgg 195  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||    
T  2904148 attggtgctcgctcaaattgcaatttagcgaatttaggttctgaaataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatgg 2904049  T
Q  196 gaag 199  Q
    ||||    
T  2904048 gaag 2904045  T

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Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 8645238 - 8645341
Alignment:
Q  104 tcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttga 203  Q
    ||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||| ||||||||||| |||    
T  8645238 tcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacattcacaaatgagaagagatttaatgggaagatga 8645337  T
Q  204 agca 207  Q
    ||||    
T  8645338 agca 8645341  T

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Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 1599404 - 1599290
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||| ||||||||| ||| ||||||| ||||||| ||||||||| | |||||||||||| ||||||||| || ||||||| ||||| |||||||| |||    
T  1599404 tggtgatcgctcaaagtgcgatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaatagga 1599305  T
Q  198 agttgaagcagaatg 212  Q
    |||||||||||||||    
T  1599304 agttgaagcagaatg 1599290  T

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Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 8529930 - 8530050
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| ||||||||| ||| ||||||| || |||| |||||||||||||||||||||||  |||||||||||| ||||||| |||| ||||||||      
T  8529930 aattggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaataattgttttccaaactttgcacacacatttacaaatgagaacagacttaaat 8530029  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    |||||| |||| |||||||||    
T  8530030 ggaagtcgaaggagaatgtgg 8530050  T

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Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 8536523 - 8536619
Alignment:
Q  118 atttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttgaagcagaatgtg 214  Q
    ||||||| ||||||| ||||||||| | |||||||||||| ||||||||| || ||||||| ||||| |||||||  ||||||||||||||||||||    
T  8536523 atttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaaatggaagttgaagcagaatgtg 8536619  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 48360957 - 48360840
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||| ||||||||| ||| ||||||| || |||| ||||||||| | |||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  48360957 tggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaatcagtgttttccaaattttgcacacagatttacaaataagaagagacttaatggga 48360858  T
Q  198 agttgaagcagaatgtgg 215  Q
    |||||||| |||||||||    
T  48360857 agttgaaggagaatgtgg 48360840  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 35780842 - 35780960
Alignment:
Q  97 ttggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggg 196  Q
    |||||| | ||||||| ||||||||||| || || ||||||||||| |||||||| || ||  ||||||||||||||||||| |||||||| || |||||    
T  35780842 ttggtgatagctcaaagtgcaatttagcaaattgcggttctgaaatcattgtttttcagattatgcacacacatctacaaatgagaagagattttatggg 35780941  T
Q  197 aagttgaagcagaatgtgg 215  Q
    ||||||||||| |||||||    
T  35780942 aagttgaagcaaaatgtgg 35780960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 5618 - 5733
Alignment:
Q  99 ggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 198  Q
    |||| ||||||||| || |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| ||||||||||| |||||||    
T  5618 ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacaaatgagaagagacttgatgggaa 5717  T
Q  199 gttgaagcagaatgtg 214  Q
    ||||||| | ||||||    
T  5718 gttgaagaaaaatgtg 5733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 16717327 - 16717447
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| | ||||||| || |||||||| ||||| | ||||||||| ||| |||||||||| |||||||||||| ||||||| ||||||||||| |||    
T  16717327 aattggtgattgctcaaagtgtaatttagcaaaatgcgattctgaaatcattcttttccaaattttgcacacacatttacaaatgagaagagacttgatg 16717426  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    ||||||||||||| |||||||    
T  16717427 ggaagttgaagcaaaatgtgg 16717447  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 9444091 - 9444211
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| ||||||||| ||||||||||| || |||| ||||||||| |||||||||||||  ||||||||| || ||||||| |||| ||||||||      
T  9444091 aattggtgatcgctcaaagtgcaatttagcaaattgtgattctgaaatcattgttttccaaactttgcacacagatttacaaatgagaacagacttaaat 9444190  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    |||||| |||| |||||||||    
T  9444191 ggaagtcgaaggagaatgtgg 9444211  T

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