View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_high_2 (Length: 437)
Name: NF7817_high_2
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 125 - 407
Target Start/End: Original strand, 52404143 - 52404425
Alignment:
| Q |
125 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
224 |
Q |
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| T |
52404143 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
52404242 |
T |
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| Q |
225 |
gacgacatattctctcccagatatggcattgttcaacatttttagctcttccatgtcccttcaatttttggcattagtccagccattgctatgttcttta |
324 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52404243 |
gacgacatattttctcacagatatggcattgttcaacatttttagctcttccatgtcccttcaatttttggcattagtccagccattgctatgttcttta |
52404342 |
T |
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| Q |
325 |
tatcaaacatttttatttggctctcacttttcagaatagcgacattcctgtaaaatgaaaaataagaatagcacttaacctcc |
407 |
Q |
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| T |
52404343 |
tattaaacatttttatttggctctcacttttcagaatagcgacattcctgtaaaatgaaaaataagaatagcacttaacctcc |
52404425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 52403990 - 52404108
Alignment:
| Q |
1 |
aaacatgttgatttactaaaacacacattacattatcataggaggagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaac |
100 |
Q |
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| T |
52403990 |
aaacatgttgatttactaaaacacacattacattatcattggaatagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaa- |
52404088 |
T |
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| Q |
101 |
ttcataaaagaaaccatgtaca |
122 |
Q |
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| T |
52404089 |
--cataaaagaaaccatgtaca |
52404108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 52401792 - 52401896
Alignment:
| Q |
12 |
tttactaaaacacacattacattatcataggaggagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaacttcataaaaga |
111 |
Q |
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||||| ||| |||||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
52401792 |
tttaccaaaccacacattacat-atcatagaaggagctgatcatccctacactaatcaccaagatgagctagcttcgttagttgttaacttcataaaaga |
52401890 |
T |
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| Q |
112 |
aaccat |
117 |
Q |
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|||||| |
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| T |
52401891 |
aaccat |
52401896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 275
Target Start/End: Original strand, 52401934 - 52402072
Alignment:
| Q |
125 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
224 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||| | |
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| T |
52401934 |
agcagtatatgagcttatttttgtttgagacatccatttttctaatgatat---------atgtcttgcagttcttagtcaattgaagttactac----c |
52402020 |
T |
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| Q |
225 |
gacgacatattctctcccagatatggcattgttcaaca-tttttagctcttc |
275 |
Q |
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||| |||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
52402021 |
gacaacatattctctcaaagatacggcattgttcaacattttttagctcttc |
52402072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 52414750 - 52414822
Alignment:
| Q |
308 |
cattgctatgttctttatatcaaacatttttatttggctctcacttttcagaatagcgacattcctgtaaaat |
380 |
Q |
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|||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| |||| |
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| T |
52414750 |
cattgctatgttctttatatcaaatttttttacttggatctcactttccagaatagcgacattcctgttaaat |
52414822 |
T |
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