View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7817_high_3 (Length: 367)
Name: NF7817_high_3
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 25111889 - 25112241
Alignment:
| Q |
1 |
ctaactcaattttatttttctttctaaaaggcttaaggaaatcccttcatcaagtcccaatcaaataggtcctaatatactacaagaagttaattttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25111889 |
ctaactcaattttatttttctttctaaaaggcttaaggaaatcccttcatcaagtcacaatcaaataggtcctaatatactacaagaagttaattttttg |
25111988 |
T |
|
| Q |
101 |
tgtatgacacaatatactaatactatataagagatatctacaaaataatttatagaaccaacttgccaaggagattgcttcattgaataataagagctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25111989 |
tgtatgacacaatatactaatactatataagagatatctacaaaataatttatagaaccaacttgccaaggagattgcttcattgaataaaaagagctaa |
25112088 |
T |
|
| Q |
201 |
agaagcattccgtaagactatgaaacataccatataaaacctcgttggagatgcttacatatttgctttctgccacatggccacgtagaggtcgaagatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25112089 |
agaagcattccgtaagactatgaaacataccatataaaacctcgttggagatgcttacatatttgctttctgccacatggccacgtagaggtcgaagatg |
25112188 |
T |
|
| Q |
301 |
cttatttgaagttcaaaaagcataaaatgagcgtcccttttgagtagataatg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25112189 |
cttatttgaagttcaaaaagcataaaatgagcgtcccttttgagtagataatg |
25112241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University