View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_high_4 (Length: 318)
Name: NF7817_high_4
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 5015685 - 5015398
Alignment:
| Q |
20 |
gtatggcgagcaacaccgtgtgaaaggctttgatatttctaaacctcattcctcatatactttaaggtttacaacatttgtttcagttgagctagcgta- |
118 |
Q |
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| T |
5015685 |
gtatggcgagcaacaccgtgtgaaagactttgatatttctaaacctcattcctcatatacgttaaggtttacaacatttgtttcagttgagctagcgtaa |
5015586 |
T |
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| Q |
119 |
ttttattgtaactataaccacatcaaaattgctttatcattgctacaatatcatcaaataatcatatctggataagaggaaacgatccatgatatgtgtt |
218 |
Q |
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| T |
5015585 |
ttttattgtaactataaccacatcaaaattgctttatcattgcttcaatatcatcaaataatcatatctggataagaggaaacgatccatgatatgtgtt |
5015486 |
T |
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| Q |
219 |
tgtaagaatggactacgcaagagatttaatgagcacctcgcgacctgctgaagatataagaatttatcctgccaacctttcttcttct |
306 |
Q |
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| T |
5015485 |
tgtaagaatggactacgcaagagatttaatgagcacctcgcgacctgctgaagatataagaatttatcctgccaacctttcttcttct |
5015398 |
T |
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