View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_high_7 (Length: 256)
Name: NF7817_high_7
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 27200987 - 27201112
Alignment:
| Q |
131 |
ctctagtctcaaagtaagccattgtagaccaactatcaataataattgacaaaagaggaaaatttggttgaaacccaatagtgcatgtagtgtttggaga |
230 |
Q |
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| T |
27200987 |
ctctagtctcaaagtaagccattgtagaccaactatcaataataattgacaaaagaggaaaatttggttgaaacccaatagtgcatgtagtgtttggaga |
27201086 |
T |
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| Q |
231 |
agtgtgtttttctactgctttgacca |
256 |
Q |
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| T |
27201087 |
agtgtgtttttctactgctttgacca |
27201112 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 27200877 - 27200946
Alignment:
| Q |
17 |
aaataggagtatacaattcattattatctatcttattggaccttaacataacattcataaacaactcaagtctc |
90 |
Q |
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| T |
27200877 |
aaataggagtatacaattcattattatc----ttattggaccttaacataacattgataaacaactcaagtctc |
27200946 |
T |
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