View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_high_9 (Length: 239)
Name: NF7817_high_9
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 3883102 - 3883313
Alignment:
| Q |
8 |
gtatggagttgacctctgtcctttacttgaaataaatctgacatttgatattcctcaaatgatttgaggaatattgttcaattgtatgacttaaatttag |
107 |
Q |
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| T |
3883102 |
gtatggagttgacctctgtcctttacttgaaataaatctgacatttgatattc-----atcatttgaggaatattgttcaattgtatgacttaaatttag |
3883196 |
T |
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| Q |
108 |
tcatttttgcaacccatccattaattcattgttacagttatttgcgtgctcaagttgagacaatttgaatattttaggcttgcaatattgatgaggaagc |
207 |
Q |
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| T |
3883197 |
tcattcttgcaacccattcattaattcattgttatagttatttgcgtgctcaagttgagacaatttgaatattttaggcttgcaatattgacgaggaagc |
3883296 |
T |
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| Q |
208 |
tgttgaagctgctatat |
224 |
Q |
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| T |
3883297 |
tgttgaagctgctatat |
3883313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 3869665 - 3869804
Alignment:
| Q |
8 |
gtatggagttgacctctg-tcctttacttgaaataaatctgacatttgatattcctcaaatgatttgaggaatattgtt-----caattgt-atgactta |
100 |
Q |
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| T |
3869665 |
gtatggggttgacctctggtccttcacctaaaataaatgtgacatttgatattcctcaaatcacttgaggaatatttttttttaaaattgtaatgactta |
3869764 |
T |
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| Q |
101 |
aatttagtcatttttgcaacccatccattaattcattgtt |
140 |
Q |
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| T |
3869765 |
acttcagtcattcttgcaacccatcctttgattcattgtt |
3869804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 3869848 - 3869906
Alignment:
| Q |
166 |
gacaatttgaatattttaggcttgcaatattgatgaggaagctgttgaagctgctatat |
224 |
Q |
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| T |
3869848 |
gacaatttggtttttttaggcgtgcaatattgatgaggaggctgttgaagctgctatat |
3869906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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