View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_low_1 (Length: 593)
Name: NF7817_low_1
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 20 - 593
Target Start/End: Complemental strand, 36289313 - 36288740
Alignment:
| Q |
20 |
gccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289313 |
gccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcac |
36289214 |
T |
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| Q |
120 |
caaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289213 |
caaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatc |
36289114 |
T |
|
| Q |
220 |
ctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcac |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289113 |
ctcttacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcac |
36289014 |
T |
|
| Q |
320 |
atattgcaaaactaccacattaattataaaactcacacttcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattg |
419 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289013 |
atattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattg |
36288914 |
T |
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| Q |
420 |
tctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctccattatcatttgtattaagc |
519 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36288913 |
tctctcatatccatcatatccaagttggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctccagtatcatttgtattaagc |
36288814 |
T |
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| Q |
520 |
ctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttct |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288813 |
ctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttct |
36288740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 14521239 - 14521329
Alignment:
| Q |
20 |
gccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaac |
110 |
Q |
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||||||||||||| ||||||||| | | | | |||| |||||||||||| ||||| || |||||| ||||||||||||||| ||||||| |
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| T |
14521239 |
gccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaacaattaccttcacaatccttagtatcaac |
14521329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 89 - 489
Target Start/End: Original strand, 12096373 - 12096773
Alignment:
| Q |
89 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
188 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||| |
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| T |
12096373 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgcaccaaaaaaccatcttctccaccaaaactatt |
12096472 |
T |
|
| Q |
189 |
accacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
288 |
Q |
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|| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
12096473 |
actgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaacttttcacatcctttggctcaaacccttttatg |
12096572 |
T |
|
| Q |
289 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacattaattataaaactcacacttcttattaggctcacttagtatcacattcc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||| | |
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| T |
12096573 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaagctcactttgtaacacattgc |
12096672 |
T |
|
| Q |
389 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaa |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| ||| |
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| T |
12096673 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaa |
12096772 |
T |
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| Q |
489 |
a |
489 |
Q |
| |
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| T |
12096773 |
a |
12096773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 528 - 593
Target Start/End: Original strand, 12096769 - 12096834
Alignment:
| Q |
528 |
aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttct |
593 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12096769 |
aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttct |
12096834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 2692166 - 2692243
Alignment:
| Q |
21 |
ccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatc |
98 |
Q |
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||||| |||||| ||||||||||| | | | |||| |||||||||||| |||||| || |||||| ||||||||||| |
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| T |
2692166 |
ccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatc |
2692243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 2699865 - 2699942
Alignment:
| Q |
21 |
ccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatc |
98 |
Q |
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|||||||||||| |||||||||||| | | | |||| ||||||||||||| ||||| | |||||| |||| |||||| |
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| T |
2699865 |
ccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatc |
2699942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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