View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7817_low_10 (Length: 229)

Name: NF7817_low_10
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7817_low_10
NF7817_low_10
[»] chr5 (13 HSPs)
chr5 (11-223)||(9004274-9004498)
chr5 (98-220)||(2873518-2873640)
chr5 (102-211)||(8637891-8638000)
chr5 (104-215)||(8678746-8678857)
chr5 (98-220)||(2844072-2844194)
chr5 (98-220)||(2855905-2856027)
chr5 (98-211)||(9073723-9073836)
chr5 (107-215)||(8547124-8547232)
chr5 (96-199)||(2904045-2904148)
chr5 (104-207)||(8645238-8645341)
chr5 (98-212)||(1599290-1599404)
chr5 (95-215)||(8529930-8530050)
chr5 (118-214)||(8536523-8536619)
[»] chr7 (2 HSPs)
chr7 (98-215)||(48360840-48360957)
chr7 (97-215)||(35780842-35780960)
[»] scaffold0627 (1 HSPs)
scaffold0627 (99-214)||(5618-5733)
[»] chr6 (1 HSPs)
chr6 (95-215)||(16717327-16717447)
[»] chr4 (1 HSPs)
chr4 (95-215)||(9444091-9444211)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 9004274 - 9004498
Alignment:
Q  11 attgttgcttccaagttcaaaattcttaagctcgcactcgagaagggacaacattcttgcctccggtttatagtcataagtccgaat------------t 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  9004274 attgttgcttccaagttcaaaattcttaagctcgcactcgagaagggacaacattcttgcctccggtttatagtcataagtccgaatcatgagactaatt 9004373  T
Q  99 ggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 198  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9004374 ggtgctcgctcaaattgcaatttagcaaaatgtggttatgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 9004473  T
Q  199 gttgaagcagaatgtggttagtgag 223  Q
    | |||||||||||||||||||||||    
T  9004474 gatgaagcagaatgtggttagtgag 9004498  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2873640 - 2873518
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| | ||||||||||||||||| || ||||||||||||||||||    
T  2873640 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtgtattccaagttttgcacacacatctacacatgagaagagacttaatggga 2873541  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    |||||||| ||||||||| ||||    
T  2873540 agttgaagaagaatgtgggtagt 2873518  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 8637891 - 8638000
Alignment:
Q  102 gctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagtt 201  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  8637891 gctcgctcaaattgcaatttagcaaaatgtggttccgaaatcattgttttccaaatcttgcacacacatttacaaatgagaagagacttaatggaaagtt 8637990  T
Q  202 gaagcagaat 211  Q
    ||||||||||    
T  8637991 gaagcagaat 8638000  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 8678746 - 8678857
Alignment:
Q  104 tcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttga 203  Q
    ||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||    
T  8678746 tcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacatttacaaatgagaagagatttaatgggaagatga 8678845  T
Q  204 agcagaatgtgg 215  Q
    |||| |||||||    
T  8678846 agcaaaatgtgg 8678857  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2844194 - 2844072
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  2844194 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatggga 2844095  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    || |  || ||||||||| ||||    
T  2844094 agctttaggagaatgtgggtagt 2844072  T

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Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 2856027 - 2855905
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  2856027 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgatataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatggga 2855928  T
Q  198 agttgaagcagaatgtggttagt 220  Q
    || |  || ||||||||| ||||    
T  2855927 agctttaggagaatgtgggtagt 2855905  T

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Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 9073836 - 9073723
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||| ||||||| ||||||| ||| | ||||    
T  9073836 tggtgctcgctcaaattgcaatttagcaaaatgtggttctgaaataagtcttttccaaattttgcacacacatttacaaatgagaagaggcttgacggga 9073737  T
Q  198 agttgaagcagaat 211  Q
    ||| ||||||||||    
T  9073736 agtcgaagcagaat 9073723  T

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Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 8547232 - 8547124
Alignment:
Q  107 ctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttgaagc 206  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||| |||||| ||||    
T  8547232 ctcaaagtgcaatttagcaaaatgttgttctgaaataattgttttccaaatcttgcaaacacatttacaaatgagaagagacttgatgtgaagtttaagc 8547133  T
Q  207 agaatgtgg 215  Q
    |||||||||    
T  8547132 agaatgtgg 8547124  T

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Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 2904148 - 2904045
Alignment:
Q  96 attggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgg 195  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||||||||    
T  2904148 attggtgctcgctcaaattgcaatttagcgaatttaggttctgaaataagtgtattccaaattttgcacacacatctacatatgagaagagacttaatgg 2904049  T
Q  196 gaag 199  Q
    ||||    
T  2904048 gaag 2904045  T

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Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 8645238 - 8645341
Alignment:
Q  104 tcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttga 203  Q
    ||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||| ||||||||||| |||    
T  8645238 tcgctcaaagttcaatttagcaaaatgtggttctgaaataagtgttttccaaatcttgcacacacattcacaaatgagaagagatttaatgggaagatga 8645337  T
Q  204 agca 207  Q
    ||||    
T  8645338 agca 8645341  T

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Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 1599404 - 1599290
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||| ||||||||| ||| ||||||| ||||||| ||||||||| | |||||||||||| ||||||||| || ||||||| ||||| |||||||| |||    
T  1599404 tggtgatcgctcaaagtgcgatttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaatagga 1599305  T
Q  198 agttgaagcagaatg 212  Q
    |||||||||||||||    
T  1599304 agttgaagcagaatg 1599290  T

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Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 8529930 - 8530050
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| ||||||||| ||| ||||||| || |||| |||||||||||||||||||||||  |||||||||||| ||||||| |||| ||||||||      
T  8529930 aattggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaataattgttttccaaactttgcacacacatttacaaatgagaacagacttaaat 8530029  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    |||||| |||| |||||||||    
T  8530030 ggaagtcgaaggagaatgtgg 8530050  T

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Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 8536523 - 8536619
Alignment:
Q  118 atttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaagttgaagcagaatgtg 214  Q
    ||||||| ||||||| ||||||||| | |||||||||||| ||||||||| || ||||||| ||||| |||||||  ||||||||||||||||||||    
T  8536523 atttagcaaaatgtgattctgaaatcaatgttttccaaattttgcacacagatttacaaatgagaagcgacttaaatggaagttgaagcagaatgtg 8536619  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 48360957 - 48360840
Alignment:
Q  98 tggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggga 197  Q
    ||||| ||||||||| ||| ||||||| || |||| ||||||||| | |||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  48360957 tggtgatcgctcaaagtgcgatttagcaaattgtgattctgaaatcagtgttttccaaattttgcacacagatttacaaataagaagagacttaatggga 48360858  T
Q  198 agttgaagcagaatgtgg 215  Q
    |||||||| |||||||||    
T  48360857 agttgaaggagaatgtgg 48360840  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 35780842 - 35780960
Alignment:
Q  97 ttggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatggg 196  Q
    |||||| | ||||||| ||||||||||| || || ||||||||||| |||||||| || ||  ||||||||||||||||||| |||||||| || |||||    
T  35780842 ttggtgatagctcaaagtgcaatttagcaaattgcggttctgaaatcattgtttttcagattatgcacacacatctacaaatgagaagagattttatggg 35780941  T
Q  197 aagttgaagcagaatgtgg 215  Q
    ||||||||||| |||||||    
T  35780942 aagttgaagcaaaatgtgg 35780960  T

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Target: scaffold0627 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 5618 - 5733
Alignment:
Q  99 ggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatgggaa 198  Q
    |||| ||||||||| || |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| ||||||||||| |||||||    
T  5618 ggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaatcattgctttccaaattttgcacacacatttacaaatgagaagagacttgatgggaa 5717  T
Q  199 gttgaagcagaatgtg 214  Q
    ||||||| | ||||||    
T  5718 gttgaagaaaaatgtg 5733  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 16717327 - 16717447
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| | ||||||| || |||||||| ||||| | ||||||||| ||| |||||||||| |||||||||||| ||||||| ||||||||||| |||    
T  16717327 aattggtgattgctcaaagtgtaatttagcaaaatgcgattctgaaatcattcttttccaaattttgcacacacatttacaaatgagaagagacttgatg 16717426  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    ||||||||||||| |||||||    
T  16717427 ggaagttgaagcaaaatgtgg 16717447  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 9444091 - 9444211
Alignment:
Q  95 aattggtgctcgctcaaattgcaatttagcgaaatgtggttctgaaataattgttttccaaatcttgcacacacatctacaaataagaagagacttaatg 194  Q
    |||||||| ||||||||| ||||||||||| || |||| ||||||||| |||||||||||||  ||||||||| || ||||||| |||| ||||||||      
T  9444091 aattggtgatcgctcaaagtgcaatttagcaaattgtgattctgaaatcattgttttccaaactttgcacacagatttacaaatgagaacagacttaaat 9444190  T
Q  195 ggaagttgaagcagaatgtgg 215  Q
    |||||| |||| |||||||||    
T  9444191 ggaagtcgaaggagaatgtgg 9444211  T

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