View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7817_low_11 (Length: 221)

Name: NF7817_low_11
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7817_low_11
NF7817_low_11
[»] chr6 (20 HSPs)
chr6 (18-208)||(7223797-7223988)
chr6 (18-91)||(11327336-11327409)
chr6 (18-91)||(19748615-19748688)
chr6 (18-91)||(7918124-7918197)
chr6 (18-91)||(22498214-22498287)
chr6 (18-90)||(3573674-3573747)
chr6 (18-91)||(17103477-17103550)
chr6 (25-90)||(30912181-30912246)
chr6 (18-93)||(21354957-21355032)
chr6 (26-85)||(31108445-31108504)
chr6 (25-97)||(26053064-26053136)
chr6 (25-97)||(26073117-26073189)
chr6 (25-91)||(17543504-17543570)
chr6 (38-91)||(8275319-8275372)
chr6 (18-93)||(27233071-27233146)
chr6 (25-87)||(27614434-27614496)
chr6 (25-93)||(27890675-27890743)
chr6 (18-72)||(15527903-15527957)
chr6 (18-92)||(33592924-33592998)
chr6 (18-91)||(17250340-17250412)
[»] chr1 (22 HSPs)
chr1 (95-208)||(2917976-2918090)
chr1 (18-91)||(25146542-25146615)
chr1 (18-95)||(42179841-42179918)
chr1 (18-82)||(9954816-9954880)
chr1 (18-93)||(9351835-9351910)
chr1 (18-88)||(16125232-16125302)
chr1 (18-91)||(13100472-13100545)
chr1 (18-94)||(23528938-23529014)
chr1 (18-89)||(21846050-21846121)
chr1 (38-91)||(9954770-9954823)
chr1 (40-90)||(14074258-14074308)
chr1 (18-72)||(19009741-19009795)
chr1 (20-88)||(17197306-17197374)
chr1 (18-93)||(17055692-17055766)
chr1 (20-91)||(41032547-41032618)
chr1 (18-92)||(27502128-27502202)
chr1 (18-91)||(17869524-17869597)
chr1 (38-91)||(18304592-18304645)
chr1 (18-91)||(13276033-13276103)
chr1 (18-93)||(16434791-16434866)
chr1 (20-93)||(32881604-32881677)
chr1 (27-91)||(30619232-30619295)
[»] chr2 (13 HSPs)
chr2 (18-91)||(20064005-20064078)
chr2 (18-91)||(19262090-19262163)
chr2 (18-91)||(7302064-7302137)
chr2 (18-83)||(20034004-20034069)
chr2 (18-90)||(25538920-25538992)
chr2 (18-91)||(19245871-19245944)
chr2 (19-91)||(21869095-21869167)
chr2 (18-80)||(27523881-27523943)
chr2 (18-91)||(31237750-31237823)
chr2 (18-90)||(30433097-30433169)
chr2 (18-91)||(974620-974694)
chr2 (18-90)||(1405065-1405137)
chr2 (17-58)||(34167570-34167611)
[»] chr5 (14 HSPs)
chr5 (18-89)||(18843997-18844068)
chr5 (18-91)||(6852340-6852413)
chr5 (18-91)||(22645501-22645574)
chr5 (18-90)||(27339962-27340034)
chr5 (42-92)||(23172217-23172267)
chr5 (20-90)||(41688441-41688511)
chr5 (18-91)||(41427701-41427774)
chr5 (18-90)||(15051872-15051944)
chr5 (18-90)||(19377885-19377957)
chr5 (18-90)||(20321225-20321297)
chr5 (18-91)||(18051307-18051380)
chr5 (18-92)||(19579225-19579300)
chr5 (21-68)||(22984594-22984641)
chr5 (18-93)||(43235150-43235225)
[»] chr4 (15 HSPs)
chr4 (18-92)||(9770394-9770468)
chr4 (18-89)||(23064737-23064808)
chr4 (25-91)||(6346729-6346795)
chr4 (25-90)||(36121112-36121177)
chr4 (18-91)||(7045226-7045299)
chr4 (19-91)||(18459405-18459477)
chr4 (18-94)||(55476270-55476346)
chr4 (19-89)||(13551448-13551518)
chr4 (18-91)||(5375947-5376020)
chr4 (35-83)||(8409815-8409863)
chr4 (37-93)||(24719869-24719925)
chr4 (19-90)||(9911186-9911257)
chr4 (18-55)||(8010946-8010983)
chr4 (18-91)||(10394892-10394965)
chr4 (25-81)||(13023847-13023903)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-91)||(38301-38374)
[»] chr3 (21 HSPs)
chr3 (18-91)||(8592173-8592246)
chr3 (18-90)||(22355841-22355913)
chr3 (18-93)||(20766673-20766748)
chr3 (26-92)||(24649522-24649588)
chr3 (25-91)||(29067565-29067631)
chr3 (18-91)||(28746058-28746131)
chr3 (18-87)||(39428189-39428258)
chr3 (18-90)||(24619972-24620044)
chr3 (18-70)||(30727654-30727706)
chr3 (18-91)||(8560231-8560304)
chr3 (18-83)||(9169877-9169942)
chr3 (18-90)||(18014273-18014345)
chr3 (18-89)||(19348835-19348906)
chr3 (18-83)||(3041505-3041570)
chr3 (18-91)||(22971091-22971163)
chr3 (20-91)||(3449084-3449155)
chr3 (19-86)||(27055376-27055443)
chr3 (20-91)||(41671463-41671534)
chr3 (18-91)||(13286226-13286299)
chr3 (18-86)||(13006107-13006174)
chr3 (37-93)||(15806220-15806276)
[»] chr8 (14 HSPs)
chr8 (18-90)||(24414062-24414134)
chr8 (18-86)||(45403311-45403379)
chr8 (39-88)||(5922351-5922400)
chr8 (18-91)||(11879882-11879955)
chr8 (18-91)||(11897298-11897371)
chr8 (18-91)||(40541594-40541667)
chr8 (18-91)||(7489057-7489130)
chr8 (20-83)||(16752307-16752370)
chr8 (18-70)||(19704252-19704304)
chr8 (18-90)||(31424446-31424518)
chr8 (18-81)||(2040401-2040464)
chr8 (20-91)||(6811103-6811174)
chr8 (18-91)||(26879792-26879865)
chr8 (20-92)||(29384085-29384157)
[»] chr7 (19 HSPs)
chr7 (18-90)||(17811630-17811702)
chr7 (18-90)||(24989549-24989621)
chr7 (18-88)||(20570662-20570732)
chr7 (18-90)||(5058810-5058882)
chr7 (18-91)||(25842505-25842578)
chr7 (25-92)||(11326572-11326639)
chr7 (19-90)||(44944620-44944691)
chr7 (25-88)||(8304375-8304438)
chr7 (19-89)||(9685070-9685140)
chr7 (18-91)||(8253958-8254031)
chr7 (18-91)||(10285677-10285750)
chr7 (18-89)||(4575012-4575083)
chr7 (18-90)||(5715567-5715635)
chr7 (25-91)||(1981099-1981165)
chr7 (18-92)||(4247638-4247712)
chr7 (25-90)||(22687042-22687107)
chr7 (38-90)||(21157475-21157527)
chr7 (18-90)||(23618204-23618276)
chr7 (42-90)||(26281165-26281213)
[»] scaffold0186 (1 HSPs)
scaffold0186 (18-91)||(8723-8796)
[»] scaffold0016 (1 HSPs)
scaffold0016 (34-91)||(56199-56256)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-93)||(76081-76155)
[»] scaffold2084 (1 HSPs)
scaffold2084 (23-91)||(115-183)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-83)||(24668-24733)
[»] scaffold0079 (1 HSPs)
scaffold0079 (18-91)||(14700-14773)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 7223797 - 7223988
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgatactacgagcttgggaagatccaac 117  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  7223797 gattgcaattttacgagtcccgattttgctattccctttcgacctgaagtaaagtcccgattttgacaaccttgatgctacgagcttgggaagatccaac 7223896  T
Q  118 atacatagcctacagaaattaacatacattaaaagcatatatacataaat-aaaaatgaaactaataagtcaagtatacatacaacattcat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7223897 atacatagcctacagaaattaacatacattaaaagcatatatacataaataaaaaatgaaactaataagtcaagtatacatacaacattcat 7223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 11327409 - 11327336
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  11327409 gattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaaccttg 11327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 19748615 - 19748688
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19748615 gattgcgattttacgaatcccgattttgctattccctttcaacctgaattaaagtcccgattttgacaaccttg 19748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 7918197 - 7918124
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||||||||||  |||| |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  7918197 gattgcaattttacgagtcctgattctgctattccctttcgacctgaagtaaagccccgattttgacaaccttg 7918124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 22498287 - 22498214
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| | |||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  22498287 gattgcgattttacgagtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaaccttg 22498214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 3573747 - 3573674
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattcccttt-caacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| ||||||||||||  |||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  3573747 gattgcgattttacgagtcctgattttgctattcccttttcgacctgaagtaaagtcccgattttgacaacctt 3573674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 17103477 - 17103550
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||||||  ||||||| ||||||||||| || ||||||||||| ||||||||||||||||||    
T  17103477 gattgcgattttacgagtcctgattttgttattccctttcgacttgaagtaaagtcccgattttgacaaccttg 17103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 30912246 - 30912181
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||||||| | ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  30912246 attttacgattatcgattttgctattctctttcaacctgaagcaaaattccgattttgacaacctt 30912181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 21354957 - 21355032
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| ||||||||||||  |||||| ||||||||||||||| ||||||||| | || |||||||||||||||||    
T  21354957 gattgcgattttacgagtcctgatttttctattccctttcaacttgaagtaaaatcccaattttgacaaccttgat 21355032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 31108445 - 31108504
Alignment:
Q  26 ttttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgaca 85  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||    
T  31108445 ttttacgaatctcgattttgctattccctttcgacctgaagtaaagtcctgattttgaca 31108504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 26053136 - 26053064
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgatacta 97  Q
    |||||||||||| | ||||||||||| |||||| |||||||||||||| | |||||||||||| ||| |||||    
T  26053136 attttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcctgattttgacaactttgctacta 26053064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 26073189 - 26073117
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgatacta 97  Q
    |||||||||||| | ||||||||||| |||||| |||||||||||||| | |||||||||||| ||| |||||    
T  26073189 attttacgagtcccaattttgctatttcctttcgacctgaagtaaagtcctgattttgacaactttgctacta 26073117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17543570 - 17543504
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||| ||||||||||||||| |||| |||||||||||||| || ||||| |||||||||    
T  17543570 attttatgagtcccgattttgctattccttttcgacctgaagtaaagtcccaattttaacaaccttg 17543504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 8275372 - 8275319
Alignment:
Q  38 cgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||||||||||||||| |||| ||| |||||||||||||| |||||    
T  8275372 cgattttgctattccctttcaaccagaagcaaaattccgattttgacagccttg 8275319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 27233146 - 27233071
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| |||||| ||||| ||||||||  |||||||||  |||||||||||||   |||||||||||||||||||    
T  27233146 gattgcgattttatgagtcccgattttgtcattcccttttgacctgaagtaaaggctcgattttgacaaccttgat 27233071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 27614496 - 27614434
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaac 87  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||| | |  |||||||||||    
T  27614496 attttacgagtcccgattttactattccctttcgacctgaagtaaattcctaattttgacaac 27614434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 27890675 - 27890743
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||||||||  | ||||| ||| ||||||||||| |||||||||||  ||| |||||||||||||||    
T  27890675 attttacgagttccaattttactactccctttcaacttgaagtaaagtctcgaatttgacaaccttgat 27890743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 15527957 - 15527903
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagt 72  Q
    |||||| ||||| |||||  ||||||||||||| |||||| ||||||||||||||    
T  15527957 gattgcgattttccgagttccgattttgctatttcctttcgacctgaagtaaagt 15527903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 33592998 - 33592924
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||||||||||||| | || |||||| ||||||||||| |  ||||| ||| | ||||||||||||| |||||    
T  33592998 gattgcaattttacgattttcaattttgttattccctttcgatatgaagcaaaatcccgattttgacaatcttga 33592924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 17250340 - 17250412
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| | |||  || ||| |||||| |||||||||||||| |||||||||| |||||||    
T  17250340 gattgcgattttacgagtcccaattc-gccatttcctttcgacctgaagtaaagtcccgattttgataaccttg 17250412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 2917976 - 2918090
Alignment:
Q  95 ctacgagcttgggaagatccaacatacatagcctacagaaattaacatacattaaaagcatatatacataaat-aaaaatgaaactaataagtcaagtat 193  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  2917976 ctacgagcttgggaagttccaacatacataacctacagaaattaacatacattaaaagcatatatacataaataaaaaatgaaactaagaagtcaagtat 2918075  T
Q  194 acatacaacattcat 208  Q
    |||||||||||||||    
T  2918076 acatacaacattcat 2918090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 25146615 - 25146542
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| |  ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  25146615 gattgcgattttacgatttccgattttgctattccctttcaacctgaagtaaagtcctgattttgacaaccttg 25146542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 42179918 - 42179841
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgatac 95  Q
    |||||| ||||||||||| |||||| ||||||||||||| |||| |||||||| ||| ||||||||||||||||||||    
T  42179918 gattgcgattttacgagtttcgattatgctattcccttttaacccgaagtaaatttctgattttgacaaccttgatac 42179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 9954880 - 9954816
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttg 82  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  9954880 gattgcgattttacgagtcccgattttgctattccctttcgaccttaagtaaagttccgattttg 9954816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 9351910 - 9351835
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||   ||||||||||||||||||    
T  9351910 gattgcgattttacgagtcccgattttgctattcgctttcgacctgaagtaaagtcttgattttgacaaccttgat 9351835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 16125302 - 16125232
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacc 88  Q
    |||||| |||||||||||| | ||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  16125302 gattgcgattttacgagtcccaattttactattccctttcgacctgaagtaaagttccgattttaacaacc 16125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13100472 - 13100545
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||  ||||||||| |||||||||| || ||||||||||| ||||||||||||||||||    
T  13100472 gattgcgattttacgagttccgattttgccattccctttcgacttgaagtaaagtcccgattttgacaaccttg 13100545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 23528938 - 23529014
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgata 94  Q
    |||||| |||||||||||| |||| || || |||| ||| |||||||| ||||||||||||||||||||||||||||    
T  23528938 gattgcgattttacgagtcccgatcttactgttcctttttaacctgaaataaagttccgattttgacaaccttgata 23529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 21846121 - 21846050
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||| |||||||| | ||||||||||||||    
T  21846121 gattgcgattttaagagtcccgattttgctattccctttcgacctggagtaaagtcctgattttgacaacct 21846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 9954823 - 9954770
Alignment:
Q  38 cgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  9954823 cgattttgctattccctttcgaccttaagtaaagtcccgattttgacaaccttg 9954770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 14074308 - 14074258
Alignment:
Q  40 attttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  14074308 attttgctattccctttcgacctgaagtaaagtcctgattttgacaacctt 14074258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19009795 - 19009741
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagt 72  Q
    |||||| |||||||||||| |||||||||||||||||||| | ||||||||||||    
T  19009795 gattgcgattttacgagtcccgattttgctattccctttcgatctgaagtaaagt 19009741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 17197374 - 17197306
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacc 88  Q
    |||| |||||||||||  ||||||||||| |||||||| || ||||||||||| |||||||||| ||||    
T  17197374 ttgcgattttacgagttccgattttgctactccctttcgacttgaagtaaagtcccgattttgataacc 17197306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 17055766 - 17055692
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| |||||||||||| ||||||| | || ||||||| |||| ||||||||  ||||||||||||||||||||    
T  17055766 gattgcgattttacgagtcccgattttacaatcccctttcgacct-aagtaaagacccgattttgacaaccttgat 17055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 41032618 - 41032547
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||| ||||||||| | || |||||||| ||| |||||||||||||||||| | || |||||||||||||||    
T  41032618 ttgcgattttacgattatcaattttgctcttctctttcaacctgaagtaaaatccctattttgacaaccttg 41032547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 27502202 - 27502128
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    ||||||||||||| |||||||| |||||||||||  | |  || ||||||||| | |||||||||||||||||||    
T  27502202 gattgcaattttatgagtctcggttttgctattctatgttgacttgaagtaaattcccgattttgacaaccttga 27502128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 17869597 - 17869524
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||| ||| |||||||||| ||||||||  ||||||| || ||| ||||||||||||| ||||    
T  17869597 gattgcgattttacgtgtcccgattttgctcttcccttttgacctgaattagagtcccgattttgacaatcttg 17869524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 18304645 - 18304592
Alignment:
Q  38 cgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||| || |||||| ||||||||| |||| ||||||||||||||||||    
T  18304645 cgattttgctttttcctttcgacctgaagtgaagtcccgattttgacaaccttg 18304592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13276103 - 13276033
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||||||  ||||||||||||| ||||| |||   |||||||| ||||||||||||| ||||    
T  13276103 gattgcgattttacgagtcctgattttgctattctctttcgacc---agtaaagtcccgattttgacaatcttg 13276033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 16434791 - 16434866
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||||||||||||| | ||||||||||||||||||||  ||||  || ||| | | ||||||||||| ||||||    
T  16434791 gattgcaattttacgattttcgattttgctattcccttttgacctagagaaaaatcctgattttgacaatcttgat 16434866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 32881604 - 32881677
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||| ||||||||| | ||||||||||| ||| ||||||| |||||| ||| | |||||||||| |||| ||||    
T  32881604 ttgcgattttacgattgtcgattttgcttttctctttcaatctgaagcaaaatcccgattttgaaaaccctgat 32881677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 30619232 - 30619295
Alignment:
Q  27 tttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||| | ||||||||||| ||| ||||| |||||||| ||| | ||||||||||||||||||    
T  30619232 tttacgattgtcgattttgctcttctctttcgacctgaag-aaaatcccgattttgacaaccttg 30619295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 20064005 - 20064078
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20064005 gattgcgattttacgagtctcgattttgctattccctttcaacctgaagtaaagccccgattttgacaaccttg 20064078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 19262163 - 19262090
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| |||||||||||||||| ||| || ||||||||||||||||||| ||||||||||    
T  19262163 gattgcgattttacgagtcccgattttgctattcccattcgacttgaagtaaagttccgatttcgacaaccttg 19262090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 7302064 - 7302137
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||||||||||||||| |||||||||||  ||| |||||| ||||||||||| |||||||||| |||||||    
T  7302064 gattgcaattttacgagtcccgattttgctaccccccttcaacttgaagtaaagtcccgattttgataaccttg 7302137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 20034069 - 20034004
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    |||||| |||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||    
T  20034069 gattgcgattttacgagtctcgattttgctactccctttcgacttgaagtaaagtcccgattttga 20034004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25538992 - 25538920
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||| | ||||||| |||||||||||| |||||| ||||||| |||||||||||||||||    
T  25538992 gattgcgattttacgagacccgatttttctattccctttcgacctgatgtaaagtaccgattttgacaacctt 25538920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 19245871 - 19245944
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| | | |||||||||||||||||||||| ||||| ||| | ||||||||||||||||||    
T  19245871 gattgcgattttacgatttttgattttgctattccctttcaacttgaagcaaaatcccgattttgacaaccttg 19245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21869167 - 21869095
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||| |||||| ||||| ||||||| |||||||||||| || ||||||||||| ||||||||||| ||||||    
T  21869167 attgcgattttaagagtcccgatttttctattccctttcgacttgaagtaaagtcccgattttgacgaccttg 21869095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 27523943 - 27523881
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattt 80  Q
    |||||| |||||||||||| ||||||||||| |||||||| || ||||||||||| |||||||    
T  27523943 gattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtcccgattt 27523881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31237823 - 31237750
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||| |||||||||||  | |||||||||||| | ||||||||||| ||||    
T  31237823 gattgcgattttacgagtcccgattttactattcccttttgaactgaagtaaagtcctgattttgacaatcttg 31237750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 30433097 - 30433169
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||| ||||| ||||||| ||||| | |||| ||||||||||| || |||||||||||||||||    
T  30433097 gattgcgattttatgagtcccgatttttctattgcttttcgacctgaagtaatgtcccgattttgacaacctt 30433169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 974620 - 974694
Alignment:
Q  18 gattgcaattttacgagtctc-gattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||||| || |||||||||| |||||||| || ||||||||||| ||||| |||| |||||||    
T  974620 gattgcgattttacgagtttccgattttgctactccctttcgacttgaagtaaagtcccgatattgataaccttg 974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1405065 - 1405137
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||| ||||  |||||||||||||||||||  |||| || ||||||  ||||||||||||||||    
T  1405065 gattgcgattttatgagtaccgattttgctattcccttttgacctaaattaaagtctcgattttgacaacctt 1405137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 34167570 - 34167611
Alignment:
Q  17 agattgcaattttacgagtctcgattttgctattccctttca 58  Q
    ||||||| ||||||||| | ||||||||||||||||||||||    
T  34167570 agattgcgattttacgattttcgattttgctattccctttca 34167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 18843997 - 18844068
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18843997 gattgcgattttacgagtcccgattttgctattccctttcgacctgaagtaaagttccgattttgacaacct 18844068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 6852413 - 6852340
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  6852413 gattgcaattttatgagtcccgattttgctattccctttcgacctgaagtgaagtcccgattttgacaaccttg 6852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 22645574 - 22645501
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||||||||||||||||| |||||||||||||||||  ||| ||||||||||||||| |||||||||||||    
T  22645574 gattgcaattttacgagtctcaattttgctattccctttagaccagaagtaaagttccgactttgacaaccttg 22645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 27340034 - 27339962
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27340034 gattgcgatttcacgattttcgattttgctattccctttcaacttgaagtaaagttccgattttgacaacctt 27339962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 23172267 - 23172217
Alignment:
Q  42 tttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23172267 tttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 23172217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 41688511 - 41688441
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||| |||||| ||||| ||||||||||||||||||||  ||| ||||||||| |||||||||||||||||    
T  41688511 ttgcgattttaggagtcccgattttgctattccctttcgtcctaaagtaaagtcccgattttgacaacctt 41688441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 41427701 - 41427774
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||||||| |||||||| ||  ||||||||||  |||||||||||||||||    
T  41427701 gattgcgattttacgagtcccgattttgctactccctttcgactcgaagtaaagtctcgattttgacaaccttg 41427774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 15051944 - 15051872
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||| ||||||||||| ||| |||| || ||||||||||| |||||||||| ||||||    
T  15051944 gattgcgattttacgagtcccgattttgctactccttttcgacttgaagtaaagtcccgattttgataacctt 15051872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 19377885 - 19377957
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||| || ||||||| ||||||||||||||||||||||| || | ||||||||| | || ||||||||||||    
T  19377885 gattgtaaatttacgattctcgattttgctattccctttccacttaaagtaaagtactgactttgacaacctt 19377957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 20321225 - 20321297
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||| ||||| ||||||| ||||||| |||  |||||||||||||| || ||||||||||||||    
T  20321225 gattgcgattttatgagtcccgattttactattcctttttgacctgaagtaaagtcccaattttgacaacctt 20321297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 18051380 - 18051307
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||| ||| |||| ||||||| |||||||||||| |||| ||||||| | ||||||||||| ||||||    
T  18051380 gattgcgattctacaagtcccgatttttctattccctttcgacctaaagtaaaatcccgattttgactaccttg 18051307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 19579225 - 19579300
Alignment:
Q  18 gattgcaattttacgagtctcgattttgct-attccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||| |||||| ||||| | |||||||| | |||||||| |||||||||||| | ||||||||||| |||||||    
T  19579225 gattgcgattttatgagtcccaattttgcttactccctttcgacctgaagtaaaatcccgattttgactaccttga 19579300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 22984641 - 22984594
Alignment:
Q  21 tgcaattttacgagtctcgattttgctattccctttcaacctgaagta 68  Q
    ||||||||||||| |  ||||||||||||||| |||||||||||||||    
T  22984641 tgcaattttacgatttacgattttgctattccttttcaacctgaagta 22984594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 43235150 - 43235225
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| |||||| ||||   |||||||||||||||||||  |  |||||||||| || |||||||||||||||||    
T  43235150 gattgcgattttatgagtactgattttgctattccctttcgtctcgaagtaaagtcccaattttgacaaccttgat 43235225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 9770394 - 9770468
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  9770394 gattgcgattttacgagtcccgattttgctattccctttcgacctaaagtaaagtcccgattttgacaaccttga 9770468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 23064808 - 23064737
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    |||||| |||||||||||  |||||| | ||||||||||| |||||||||||||| ||||||||||||||||    
T  23064808 gattgcgattttacgagttccgatttcgttattccctttcgacctgaagtaaagtcccgattttgacaacct 23064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 6346795 - 6346729
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||||| | ||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||    
T  6346795 attttacgattttcgattttgctcttccctttcgacctgaagcaaatttccgattttgacaaccttg 6346729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 36121112 - 36121177
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||||||||| |||||  |||||||||||||||| ||||||||||  |||||||||||||||||    
T  36121112 attttacgagtcccgattaagctattccctttcaacttgaagtaaagacccgattttgacaacctt 36121177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 7045226 - 7045299
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||| || | | ||||||||| ||||||||| |||||||||||| |||| |||||||||||||||    
T  7045226 gattgcgattttatgatttttgattttgctcttccctttcgacctgaagtaaaattcctattttgacaaccttg 7045299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 18459477 - 18459405
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||| ||||||||| | ||||||||||| || ||||||||||||||| ||| |  |||||||||||||||||    
T  18459477 attgcgattttacgattgtcgattttgctctttcctttcaacctgaagcaaaatctcgattttgacaaccttg 18459405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 55476270 - 55476346
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgata 94  Q
    |||||| |||||||||||  |||||||  || |||||||| || ||||||||||| |||||||||| ||||||||||    
T  55476270 gattgcgattttacgagtaccgattttattactccctttcgacttgaagtaaagtcccgattttgataaccttgata 55476346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 13551518 - 13551448
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    ||||| ||||||||||||| |||||||||||||| |||| ||| |||||||||| | ||| || |||||||    
T  13551518 attgcgattttacgagtcttgattttgctattccttttcgaccagaagtaaagtccggatctttacaacct 13551448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 5375947 - 5376020
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||| |||||   |||  |||||||||||||| || |||||||||||||||    
T  5375947 gattgcgattttacgagtcccgattttactatttatttttgacctgaagtaaagtcccaattttgacaaccttg 5376020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 8409815 - 8409863
Alignment:
Q  35 tctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    |||| ||||||||| ||||||||||| ||||||||||| ||||||||||    
T  8409815 tctcaattttgctactccctttcaacttgaagtaaagtcccgattttga 8409863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 24719869 - 24719925
Alignment:
Q  37 tcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    ||||||||||| ||||||||| |||||||| ||| |  |||||||||||||||||||    
T  24719869 tcgattttgctcttccctttcgacctgaagcaaaatctcgattttgacaaccttgat 24719925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 9911257 - 9911186
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||| |||||||||||| ||||||| |||||||||||| |  ||||||||||| |  ||||||||| ||||    
T  9911257 attgcgattttacgagtcccgattttactattccctttcgatatgaagtaaagtcctaattttgacaccctt 9911186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 8010983 - 8010946
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctt 55  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  8010983 gattgcgattttacgagtcccgattttgctattccctt 8010946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 10394892 - 10394965
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| | | ||||||||| || | ||||||| ||||| ||| |||| |||||||||||||||    
T  10394892 gattgcgattttacgatttttgattttgctctttcttttcaacttgaagcaaaattccaattttgacaaccttg 10394965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 13023847 - 13023903
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgatttt 81  Q
    |||||||||||  |||||||||||||| ||||| || ||||||||||| || |||||    
T  13023847 attttacgagttccgattttgctattctctttcgacttgaagtaaagtcccaatttt 13023903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 38374 - 38301
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    ||||||||||||||||||| ||||||||||||| |||||| || ||||||||||| ||||||||||||||||||    
T  38374 gattgcaattttacgagtcccgattttgctatttcctttcgacttgaagtaaagtcccgattttgacaaccttg 38301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 8592246 - 8592173
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||||||||||||||||| |||||| || ||||||||||| ||||||| ||||||||||    
T  8592246 gattgcgattttacgagtctcgattttgctatttcctttcgacttgaagtaaagtcccgatttcgacaaccttg 8592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 22355913 - 22355841
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||||    
T  22355913 gattgcgattttacgagtcccgattttgctattccatttcgacctgatgtaaagttccgattttgagaacctt 22355841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 20766748 - 20766673
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||| |||||||||||||||||||||||| || ||||| |  ||||||||||| ||||||||||||||||||||    
T  20766748 gattgcgattttacgagtctcgattttgctactctctttcgagttgaagtaaagtcccgattttgacaaccttgat 20766673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 24649588 - 24649522
Alignment:
Q  26 ttttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  24649588 ttttacgagtcccaattttgctattccctttcgacctgaagtaaagtcccaattttgacaaccttga 24649522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 29067565 - 29067631
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  29067565 attttatgagttccgattttgctattcccattcgacctgaagtaaagttccgattttgacaaccttg 29067631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 28746058 - 28746131
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| |||||||||||||  ||||| |||||||||||||| || |||||||||||||||    
T  28746058 gattgcgattttacgagtcccgattttgctattttctttcgacctgaagtaaagtcccaattttgacaaccttg 28746131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 39428189 - 39428258
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaac 87  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  39428189 gattgcgattttatgagtcccgattttgctattccctttcaaccgcaagtaaagtcccgattttgacaac 39428258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 24620044 - 24619972
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| ||||||| |||| | |||||||||||||||||  || |||||||||||||||||||||||||||||    
T  24620044 gattgcgattttacaagtcccaattttgctattcccttttgacttgaagtaaagttccgattttgacaacctt 24619972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30727706 - 30727654
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaa 70  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  30727706 gattgcgattttaggagtctcgattttgctattccctttcaacctgaagtaaa 30727654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 8560304 - 8560231
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||| ||||||||||||||||||| |||||||  || ||||||||||| |||||||||| |||||||    
T  8560304 gattgcgatttcacgagtctcgattttgctactcccttttgacttgaagtaaagtcccgattttgataaccttg 8560231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 9169877 - 9169942
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    ||||||||||||||| ||| | ||||||||| | |||||| || ||||||||||||||||||||||    
T  9169877 gattgcaattttacgggtcccaattttgctacttcctttcgacttgaagtaaagttccgattttga 9169942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 18014273 - 18014345
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||| | ||||||||| ||| ||| ||| ||||||||||| |||||||||| ||||||    
T  18014273 gattgcgattttacgagtcccaattttgctactccattttaacttgaagtaaagtcccgattttgataacctt 18014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 19348835 - 19348906
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    |||||| |||||||||||||||||||||||| |||||||  || |||||||||||  | ||||||| |||||    
T  19348835 gattgcgattttacgagtctcgattttgctactcccttttgacttgaagtaaagtctcaattttgataacct 19348906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 3041505 - 3041570
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    |||||| |||||||||||| ||||||||||| ||| |||| || ||||||||| | ||||||||||    
T  3041505 gattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaaatcccgattttga 3041570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 22971091 - 22971163
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||||||| | ||||| ||| ||||||||||| || ||||||| |||||||    
T  22971091 gattgcgattttacgagtcccgattttgctact-ccttttaacttgaagtaaagtcccaattttgataaccttg 22971163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 3449155 - 3449084
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||| ||||||||| | ||||||||||| ||| |||||||||| ||| ||| | || |||||||||||||||    
T  3449155 ttgcgattttacgattgtcgattttgctcttctctttcaacctaaagcaaaatcccaattttgacaaccttg 3449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27055376 - 27055443
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaa 86  Q
    ||||| ||||||||| |  ||||||| ||||| |||||  |||||||||||| |||||||||||||||    
T  27055376 attgcgattttacgatttgcgattttactatttcctttttacctgaagtaaaattccgattttgacaa 27055443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 41671463 - 41671534
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||| ||||||| | | ||||||||||| ||| ||||| |||||||| ||| | ||||||||||||||||||    
T  41671463 ttgcgattttacaattatcgattttgctcttctctttcgacctgaagcaaaatcccgattttgacaaccttg 41671534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 13286226 - 13286299
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||||| | |||||| || ||||||| | |||||||| ||| ||  ||||||||||||||||    
T  13286226 gattgcgattttacgagttttgatttttctcttcccttccgacctgaagcaaaattgtgattttgacaaccttg 13286299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 13006107 - 13006174
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaa 86  Q
    |||||| ||||||||| | || |||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  13006107 gattgcgattttacgattttcaattttgctattccctttcgacctaaagcaaa-tcccgattttgacaa 13006174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 15806276 - 15806220
Alignment:
Q  37 tcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    ||||||||||| ||||||||| | |||||| ||| |  |||||||||||||||||||    
T  15806276 tcgattttgcttttccctttcgagctgaagcaaaatctcgattttgacaaccttgat 15806220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 24414134 - 24414062
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||||  |||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  24414134 gattgcgattttacgagtctaaattttgctattccctttcgacatgaagtaaagttccaattttgacaacctt 24414062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45403311 - 45403379
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaa 86  Q
    |||||| ||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||    
T  45403311 gattgcgattttacgagtctcgattttgctattccctttcgacgtgaaataaagtcccgattttgacaa 45403379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5922351 - 5922400
Alignment:
Q  39 gattttgctattccctttcaacctgaagtaaagttccgattttgacaacc 88  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  5922351 gattttgctattccctttcgacctgaagtaaagtcccgattttgacaacc 5922400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11879882 - 11879955
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||  ||||||| |||||||||||  |||||||||||| | ||||||||||||||||||    
T  11879882 gattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaaccttg 11879955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11897298 - 11897371
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||  ||||||| |||||||||||  |||||||||||| | ||||||||||||||||||    
T  11897298 gattgcgattttacgagttccgattttactattcccttttgacctgaagtaaaatcccgattttgacaaccttg 11897371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 40541667 - 40541594
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||||||| | |||||| || ||||||||||| |||||||||| |||||||    
T  40541667 gattgcgattttacgagtcccgattttgctacttcctttcgacttgaagtaaagtcccgattttgataaccttg 40541594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 7489130 - 7489057
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||||||   ||||||||||| |||||| || ||||||||||| | ||||||||||||||||    
T  7489130 gattgcgattttacgagtcctaattttgctatttcctttcgacttgaagtaaagtcctgattttgacaaccttg 7489057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 16752307 - 16752370
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    |||| |||||||||||| | ||||||||| |||||||| || |||||||||||||| |||||||    
T  16752307 ttgcgattttacgagtcccaattttgctactccctttcgacttgaagtaaagttccaattttga 16752370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 19704304 - 19704252
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaa 70  Q
    |||||| |||||||||||| |||||||||||||||||||  || |||||||||    
T  19704304 gattgcgattttacgagtcccgattttgctattccctttggacttgaagtaaa 19704252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31424446 - 31424518
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| ||||||||| | |||||||||||  || ||||| |||||||||||| |  ||||||||||||||||    
T  31424446 gattgcgattttacgattgtcgattttgctcatctctttcgacctgaagtaaaatctcgattttgacaacctt 31424518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2040401 - 2040464
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgatttt 81  Q
    |||||| |||||||||||  ||||||||||| || ||||| || ||||||||||| ||||||||    
T  2040401 gattgcgattttacgagttccgattttgctactctctttcgacttgaagtaaagtcccgatttt 2040464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 6811103 - 6811174
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||| ||||||||| | ||||||||||| ||| ||||| |  ||||  ||||||||||||||||||||||||    
T  6811103 ttgcgattttacgattgtcgattttgctcttctctttcgatttgaaacaaagttccgattttgacaaccttg 6811174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 26879792 - 26879865
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| | | |||||||||  |||||||||||||||| |||| |  ||| |||||||||||||    
T  26879792 gattgcgattttacgatttttgattttgctgatccctttcaacctgaactaaaatcacgactttgacaaccttg 26879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29384157 - 29384085
Alignment:
Q  20 ttgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||| ||||||||| | |||||||| || ||  ||||| |||||||| ||| | |||||||||||||||||||    
T  29384157 ttgcgattttacgattgtcgatttttctcttttctttcgacctgaagcaaaatcccgattttgacaaccttga 29384085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 17811630 - 17811702
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| ||||||||| || |||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  17811630 gattgcgattttacgaatcccgattttgctattcccttttgacctgaagtaaagtcccgattttgacaacctt 17811702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 24989621 - 24989549
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||| |||||||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  24989621 gattgccattttacgagtcccgattttgttattccctttcgacctaaagtaaagtcccgattttgacaacctt 24989549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 20570732 - 20570662
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacc 88  Q
    |||||| |||||| ||||||| |||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  20570732 gattgcgattttatgagtctcaattttgttattccctttcaacctgaagtagagtcccgattttgacaacc 20570662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 5058810 - 5058882
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||||||||||||| |  |||||||||||||||||||  | |||||||||||| |||||||||||||||||    
T  5058810 gattgcaattttacgaattccgattttgctattcccttttgatctgaagtaaagtcccgattttgacaacctt 5058882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 25842578 - 25842505
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||||||| |||||||| || ||||||||||| || ||||||| |||||||    
T  25842578 gattgcgattttacgagtcccgattttgctactccctttcgacttgaagtaaagtcccaattttgataaccttg 25842505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 11326572 - 11326639
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||| ||||| | |||||||||||| ||||| ||||||| |||||||| |||||||||||||||||    
T  11326572 attttaagagtcccaattttgctattctctttccacctgaaataaagttctgattttgacaaccttga 11326639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 44944691 - 44944620
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||| |||||||||||| ||  ||||||||| |||||| | |||||||||||| |||||||||||||||||    
T  44944691 attgcgattttacgagtcccgcatttgctatttcctttcgatctgaagtaaagtcccgattttgacaacctt 44944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 8304375 - 8304438
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacc 88  Q
    |||||||||||| ||||||||||| || ||||| || |||||||||||  ||||||||||||||    
T  8304375 attttacgagtcgcgattttgctactctctttcgacttgaagtaaagtctcgattttgacaacc 8304438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9685140 - 9685070
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    ||||| ||||||||||||| |||||||||||||| |||| ||| |||||||||| | ||| || |||||||    
T  9685140 attgcgattttacgagtcttgattttgctattccttttcgaccagaagtaaagtccggatctttacaacct 9685070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 8254031 - 8253958
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||||||||||||||| |||||||| |  | |||||||||  | ||||||| |||||||    
T  8254031 gattgcgattttacgagtctcgattttgctactccctttcgatttaaagtaaagtatcaattttgataaccttg 8253958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 10285750 - 10285677
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| ||||||||| | | |||||| || ||| ||||| |||||||||||| | ||||||||||||||||||    
T  10285750 gattgcgattttacgattgttgatttttctcttctctttcgacctgaagtaaaatcccgattttgacaaccttg 10285677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4575012 - 4575083
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacct 89  Q
    |||||| ||||||||| | | |||||| ||||||||||||||||||||| ||| |  | |||||||||||||    
T  4575012 gattgcgattttacgatttttgattttactattccctttcaacctgaagaaaaatctcaattttgacaacct 4575083  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 5715567 - 5715635
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||||||||| ||||||| ||||| |||||| ||    |||||||| |||||||||||||||||    
T  5715567 gattgcgattttacgagtcccgatttttctatttcctttcgac----agtaaagtcccgattttgacaacctt 5715635  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 1981165 - 1981099
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||  | ||||| ||| |||||||| || ||||||||||| |||||||||| |||||||    
T  1981165 attttacgagttccaatttttctaatccctttcgacttgaagtaaagtcccgattttgataaccttg 1981099  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 4247638 - 4247712
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttga 92  Q
    |||||| ||||||||| || | |||||  ||||||||||| || ||||||||||| || |||||||||| |||||    
T  4247638 gattgcgattttacgaatcccaatttttgtattccctttcgacttgaagtaaagtcccaattttgacaatcttga 4247712  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 22687107 - 22687042
Alignment:
Q  25 attttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||||||| ||||||||||||| ||| ||||| | |||||| ||| | |||||||| ||||||||    
T  22687107 attttacgattctcgattttgctcttctctttcgatctgaagcaaaatcccgattttaacaacctt 22687042  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 21157527 - 21157475
Alignment:
Q  38 cgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||||||||||||||||  | |||||||||| |||| ||||| ||||||||    
T  21157527 cgattttgctattcccttttgatctgaagtaaaattccaattttaacaacctt 21157475  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 23618276 - 23618204
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    |||||| |||||  ||||| ||||||||||| ||||||||||| | |||||||||   |||||||| ||||||    
T  23618276 gattgcgattttcggagtcccgattttgctactccctttcaacttaaagtaaagtcttgattttgataacctt 23618204  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 26281213 - 26281165
Alignment:
Q  42 tttgctattccctttcaacctgaagtaaagttccgattttgacaacctt 90  Q
    ||||||||||| |||| |||| ||||||||| | |||||||||||||||    
T  26281213 tttgctattccttttcgacctaaagtaaagtcctgattttgacaacctt 26281165  T

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Target: scaffold0186 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 8723 - 8796
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||  |||||||| ||||||||||| |||||||||||||| |||||||||| |||||||    
T  8723 gattgcgattttacgagttccgattttgttattccctttcgacctgaagtaaagtcccgattttgagaaccttg 8796  T

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Target: scaffold0016 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 56256 - 56199
Alignment:
Q  34 gtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  56256 gtctcgattttgctattccctttcgacctgaagtaaagtctcgattttgacaaccttg 56199  T

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Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 76155 - 76081
Alignment:
Q  19 attgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttgat 93  Q
    |||||||||||||||||| ||  ||||||||| |||||| ||  |||||||||| ||||||||||||||||||||    
T  76155 attgcaattttacgagtcccgggtttgctatttcctttcgactggaagtaaagtcccgattttgacaaccttgat 76081  T

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Target: scaffold2084 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 115 - 183
Alignment:
Q  23 caattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||||||||||| ||||||||||| |||||||  || ||||||||||| |||||||||| |||||||    
T  115 caattttacgagtcccgattttgctactcccttttgacttgaagtaaagtcccgattttgataaccttg 183  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 24668 - 24733
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttga 83  Q
    |||| |||||||||||||| ||||||||||| |||||||| || ||||||||||||  ||||||||    
T  24668 gattacaattttacgagtcccgattttgctactccctttcgacttgaagtaaagttttgattttga 24733  T

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Target: scaffold0079 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 14773 - 14700
Alignment:
Q  18 gattgcaattttacgagtctcgattttgctattccctttcaacctgaagtaaagttccgattttgacaaccttg 91  Q
    |||||| |||||||||||| ||||||||||| ||| |||| || ||||||||||  |||||||||| |||||||    
T  14773 gattgcgattttacgagtcccgattttgctactccatttcgacttgaagtaaagccccgattttgataaccttg 14700  T

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