View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7817_low_6 (Length: 278)
Name: NF7817_low_6
Description: NF7817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7817_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 33607963 - 33607706
Alignment:
| Q |
17 |
actatccacagcaaataccacaccagccatttttgaaataccttttttgttttgtctatggatttcagt---tagtttaagtctgtgctggttagggtgc |
113 |
Q |
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| T |
33607963 |
actatccacagcaaataccccaccagccatttttgaaataccttttttttttcttctatggatttcagtaattagtttaagtctgtgctggttagggtgc |
33607864 |
T |
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| Q |
114 |
tcataattagaagtagggcaactaatttataggccaagggtttgcatggtcgtttgtctttaactagatgtatgtggatgaaacatactaggactttttt |
213 |
Q |
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| T |
33607863 |
tcataattagaagtagggcaactaatttataggctaagggtttgcatggtcgtttgtctttaactagatgtatgtggatgaaacatactaggactttttt |
33607764 |
T |
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| Q |
214 |
attcctataatagaattgtcattctattaggcgataatcttgttaatcataacaccaa |
271 |
Q |
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| T |
33607763 |
attcctataatagaattgtcattctattaggcgataatcttgttaatcataacaccaa |
33607706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 33615641 - 33615566
Alignment:
| Q |
84 |
gttagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggccaagggtttgca |
159 |
Q |
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| T |
33615641 |
gttagtttaattctatgctggttgggacgctcataattagaaatggggaaactaatttataggccaaggggttgca |
33615566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 33620994 - 33620958
Alignment:
| Q |
227 |
aattgtcattctattaggcgataatcttgttaatcat |
263 |
Q |
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| T |
33620994 |
aattgtcattctattaggcgatattcttgttaatcat |
33620958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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