View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7818_high_1 (Length: 445)

Name: NF7818_high_1
Description: NF7818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7818_high_1
NF7818_high_1
[»] chr6 (5 HSPs)
chr6 (1-334)||(31774276-31774602)
chr6 (387-430)||(31774180-31774223)
chr6 (92-147)||(26559165-26559220)
chr6 (97-150)||(2455896-2455949)
chr6 (97-137)||(3738200-3738240)
[»] chr8 (9 HSPs)
chr8 (82-137)||(44236739-44236794)
chr8 (82-136)||(7008698-7008752)
chr8 (97-143)||(1889066-1889112)
chr8 (98-148)||(5226603-5226653)
chr8 (100-150)||(24326117-24326167)
chr8 (80-150)||(30191055-30191125)
chr8 (97-150)||(1664455-1664508)
chr8 (97-150)||(1892155-1892208)
chr8 (103-136)||(6496776-6496809)
[»] chr5 (1 HSPs)
chr5 (83-137)||(25720334-25720388)
[»] chr4 (8 HSPs)
chr4 (97-154)||(7367985-7368042)
chr4 (98-143)||(51560221-51560266)
chr4 (99-150)||(8328052-8328103)
chr4 (97-143)||(29126194-29126240)
chr4 (95-137)||(46187838-46187880)
chr4 (97-142)||(3549486-3549531)
chr4 (97-150)||(3639099-3639152)
chr4 (97-142)||(50746069-50746114)
[»] chr3 (2 HSPs)
chr3 (77-150)||(30657372-30657445)
chr3 (97-137)||(25699129-25699169)
[»] chr2 (5 HSPs)
chr2 (97-154)||(14277824-14277881)
chr2 (97-150)||(35809953-35810006)
chr2 (97-142)||(28803461-28803506)
chr2 (97-150)||(36236374-36236427)
chr2 (97-149)||(42852633-42852685)
[»] chr7 (5 HSPs)
chr7 (102-142)||(28165185-28165225)
chr7 (97-134)||(1418521-1418558)
chr7 (97-150)||(24048626-24048679)
chr7 (98-135)||(24363532-24363569)
chr7 (98-150)||(21247586-21247638)
[»] chr1 (3 HSPs)
chr1 (98-150)||(25719757-25719809)
chr1 (81-150)||(32515356-32515425)
chr1 (97-150)||(46504149-46504202)
[»] scaffold0091 (1 HSPs)
scaffold0091 (98-148)||(6020-6070)
[»] scaffold0199 (1 HSPs)
scaffold0199 (97-150)||(6896-6949)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 31774602 - 31774276
Alignment:
Q  1 atgtcgaataatatcaggcttggtgcgtagatataaatggtttgtggccttgaatggatatactctaatactatattaggggcctgtatgaattatctta 100  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  31774602 atgtccaatactatcaggcttggtgcgtagatataaatggtttgtggccttgaatggata----------ctatattaggggcctgtatgaattatctta 31774513  T
Q  101 tttgagtttatctaccggcataagcacttatgagactctttggaagagctcatgnnnnnnnnn---cttatgatatgttcattctcaacttattttcaaa 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||            ||||||||||||||||||||||||||||||||||    
T  31774512 tttgagtttatctaccggcataagcacttatgagactgtttggaagagctcatgaaaaaaaaaaaacttatgatatgttcattctcaacttattttcaaa 31774413  T
Q  198 acccttcaagatactaatgaaacaacctataccttatctcgaaagattttaactttattttatcttgtagcttattcataatagcttatataataaacac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31774412 acccttcaagatactaatgaaacaacctataccttatctcgaaagatttaaactttattttatcttgtagcttattcataatagcttatataataaacac 31774313  T
Q  298 ttatcctataagatgcacaaacaaccactcaagcaac 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  31774312 ttatcctataagatgcacaaacaaccactcaagcaac 31774276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 31774223 - 31774180
Alignment:
Q  387 caagatagaagttgaattataccgcaaaaagaacaccaagaatc 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31774223 caagatagaagttgaattataccgcaaaaagaacaccaagaatc 31774180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 26559165 - 26559220
Alignment:
Q  92 attatcttatttgagtttatctaccggcataagcacttatgagactctttggaaga 147  Q
    |||| |||||||||||||| |||| |||||||||| || ||||||| |||||||||    
T  26559165 attaacttatttgagtttacctactggcataagcatttgtgagactgtttggaaga 26559220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 2455949 - 2455896
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||| ||||||||||||||||||||||  |||| | ||| ||||||||    
T  2455949 cttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagct 2455896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 3738240 - 3738200
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagact 137  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  3738240 cttatttgagtttatctactagcataagcacttgtgagact 3738200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 44236739 - 44236794
Alignment:
Q  82 gcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagact 137  Q
    |||||| || |||| ||||||||||||||||||| ||||||||||||| |||||||    
T  44236739 gcctgtttggattaccttatttgagtttatctactggcataagcacttgtgagact 44236794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 7008752 - 7008698
Alignment:
Q  82 gcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagac 136  Q
    |||||| ||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  7008752 gcctgtttgaattgacttatttgagtttatctactggcataagcacttgtgagac 7008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 1889066 - 1889112
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttgg 143  Q
    ||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  1889066 cttatttgagtttatctactggcataaacacttttgagactgtttgg 1889112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 5226653 - 5226603
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgagactctttggaagag 148  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||||||||    
T  5226653 ttatttgatcttatctacttgcataagcacttatgagactgtttggaagag 5226603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 24326167 - 24326117
Alignment:
Q  100 atttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||| ||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagct 24326117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 30191055 - 30191125
Alignment:
Q  80 gggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||| || || | ||||||||||||||||||  ||||||||||||| | ||||| ||||| ||||||    
T  30191055 gggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagct 30191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 1664508 - 1664455
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||||||||||||  |||||| ||||| ||||||| ||||| ||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagct 1664455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 1892155 - 1892208
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    ||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||||||    
T  1892155 cttatttgagtttatctaccgtcataaacacttgtgagattgtttggcagagct 1892208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 6496776 - 6496809
Alignment:
Q  103 tgagtttatctaccggcataagcacttatgagac 136  Q
    ||||||||||||| ||||||||||||||||||||    
T  6496776 tgagtttatctactggcataagcacttatgagac 6496809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 25720334 - 25720388
Alignment:
Q  83 cctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagact 137  Q
    ||||| ||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcacttgtgagact 25720388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 7367985 - 7368042
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagctcatg 154  Q
    ||||||||||||||||||| ||||||| | ||| ||||||| ||||| ||||||||||    
T  7367985 cttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatg 7368042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 51560221 - 51560266
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgagactctttgg 143  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||    
T  51560221 ttatatgagcttatctactggcataagcacttatgagactctttgg 51560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 8328052 - 8328103
Alignment:
Q  99 tatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||| |||||||  ||||||||||||||||||||| ||||||| ||||    
T  8328052 tatttgagcttatctattggcataagcacttatgagactgtttggaatagct 8328103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 29126194 - 29126240
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttgg 143  Q
    |||||||||| ||||||||||||||||||||||| || ||| |||||    
T  29126194 cttatttgagcttatctaccggcataagcacttacgaaactatttgg 29126240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 46187838 - 46187880
Alignment:
Q  95 atcttatttgagtttatctaccggcataagcacttatgagact 137  Q
    |||||||||||| |||||||| ||||||| |||||||||||||    
T  46187838 atcttatttgagcttatctactggcataaacacttatgagact 46187880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 3549486 - 3549531
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttg 142  Q
    ||||||| ||||||||||  ||||||||||||||||||||| ||||    
T  3549486 cttattttagtttatctattggcataagcacttatgagactgtttg 3549531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 3639099 - 3639152
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||| |||||||||| ||||||||| | ||||| | ||||||||||||    
T  3639099 cttatttgagcttatctaccgacataagcacctgtgagattatttggaagagct 3639152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 50746114 - 50746069
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttg 142  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||    
T  50746114 cttatttgagtttatctacttgcataagcacttgtgagactatttg 50746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 30657445 - 30657372
Alignment:
Q  77 taggggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||| |||| ||||||   |||||||||||||||||| | ||||||||||| ||||| | ||||||||||||    
T  30657445 taggggtctgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgtttggaagagct 30657372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 25699129 - 25699169
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagact 137  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  25699129 cttatttgagtttatctattgacataagcacttatgagact 25699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 14277824 - 14277881
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagctcatg 154  Q
    ||||||||||||||||||| | |||||| |||| ||||| | ||||||||||||||||    
T  14277824 cttatttgagtttatctacggacataagtacttgtgagagtgtttggaagagctcatg 14277881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 35810006 - 35809953
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||| ||||||    
T  35810006 cttatttgagcttatctaccggcataagcagttgtgagactatttgggagagct 35809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 28803461 - 28803506
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttg 142  Q
    |||||||||| |||||||||||||||||||| | ||||||| ||||    
T  28803461 cttatttgagcttatctaccggcataagcacatgtgagactgtttg 28803506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 36236374 - 36236427
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||||| ||||| | ||||||||||||| |||||| |||| |||||||    
T  36236374 cttatttgagttcatctatcagcataagcacttacgagactatttgtaagagct 36236427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 42852633 - 42852685
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagc 149  Q
    |||||||||  |||||| | ||||||||||||| ||||||| |||||||||||    
T  42852633 cttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagc 42852685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 28165225 - 28165185
Alignment:
Q  102 ttgagtttatctaccggcataagcacttatgagactctttg 142  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  28165225 ttgagcttatctaccagcataagcacttatgagactctttg 28165185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 1418558 - 1418521
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgag 134  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  1418558 cttatttgagcttatctactggcataagcacttatgag 1418521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 24048679 - 24048626
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    ||||||||||||||||||| | |||||| |||||  ||||| ||||||||||||    
T  24048679 cttatttgagtttatctactgacataagtacttaaaagactgtttggaagagct 24048626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 24363532 - 24363569
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgaga 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  24363532 ttatttgagtttatctactagcataagcacttatgaga 24363569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 21247638 - 21247586
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    ||||||||||||||||||| |||||| ||||| ||| ||| |||| |||||||    
T  21247638 ttatttgagtttatctacctgcataaccacttgtgaaactgtttgcaagagct 21247586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 25719809 - 25719757
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||||||| ||| ||| |||||| |||||||||||||||| ||||||    
T  25719809 ttatttgagtttatttactggcttaagcatttatgagactctttgggagagct 25719757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 32515356 - 32515425
Alignment:
Q  81 ggcctgtatgaattatcttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    ||||||| || |||| | |||||||||||||||||   ||||||||||| ||||||| ||||| ||||||    
T  32515356 ggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagct 32515425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 46504149 - 46504202
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||||||||||||||||||||| | || ||||||| || || ||||||    
T  46504149 cttatttgagtttatctaccggcataagtatttgtgagactgttcggtagagct 46504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 6070 - 6020
Alignment:
Q  98 ttatttgagtttatctaccggcataagcacttatgagactctttggaagag 148  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||||||||    
T  6070 ttatttgatcttatctacttgcataagcacttatgagactgtttggaagag 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 6949 - 6896
Alignment:
Q  97 cttatttgagtttatctaccggcataagcacttatgagactctttggaagagct 150  Q
    |||||||||||||||||||  |||||| ||||| ||||||| ||||| ||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagct 6896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University