View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7818_low_2 (Length: 395)
Name: NF7818_low_2
Description: NF7818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7818_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 46978 - 47345
Alignment:
| Q |
16 |
ataacttaagatccgcgattgtgaagaacagaaccacacttggttgtttactttgggaaccacacttggttcccaaatagaatacactagatattagata |
115 |
Q |
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| T |
46978 |
ataacttaagatccgccactgtgaagaagagaaccacacttggttgtttactttgggaaccacacttggttcccaaatagaatacactagatattagata |
47077 |
T |
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| Q |
116 |
actatgaatattgatcgtgactttgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47078 |
actatgaatattgatcgtgactttgaagagtagtttactaagtaatagtatgattacaaattaaatctcattgaaacctcaattgagatggtctcttctt |
47177 |
T |
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| Q |
216 |
gaaatagaatgatactataagagtttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47178 |
gaaatagaatgatactataagagtttgtattgttctgaggagtctatctgatcaagacgtgtcttcaaatatggaagattgaaaacaaaattggaagcca |
47277 |
T |
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| Q |
316 |
atggtacagttgaacattgtgcttctgtattttcacattcacctattacacactctgcagttgatttt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47278 |
atggtacagttgaacattgtgcttctgtattttcacattcacctattacacactctgcagttgatttt |
47345 |
T |
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