View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7818_low_3 (Length: 321)

Name: NF7818_low_3
Description: NF7818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7818_low_3
NF7818_low_3
[»] chr7 (3 HSPs)
chr7 (1-214)||(3597869-3598082)
chr7 (159-211)||(27962549-27962602)
chr7 (232-284)||(27962625-27962677)
[»] chr3 (4 HSPs)
chr3 (1-151)||(2251888-2252038)
chr3 (1-155)||(2252444-2252598)
chr3 (61-196)||(49233862-49233997)
chr3 (103-196)||(49234475-49234569)
[»] chr2 (2 HSPs)
chr2 (57-196)||(24455801-24455940)
chr2 (232-284)||(24455714-24455766)
[»] chr5 (1 HSPs)
chr5 (232-291)||(4356940-4357001)
[»] chr1 (2 HSPs)
chr1 (103-196)||(50862480-50862573)
chr1 (232-284)||(25433734-25433786)
[»] chr8 (4 HSPs)
chr8 (232-284)||(43227946-43227998)
chr8 (103-198)||(43228035-43228130)
chr8 (159-211)||(14839088-14839141)
chr8 (232-284)||(14839013-14839065)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3597869 - 3598082
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3597869 cattgttgcttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccaccaa 3597968  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| |    
T  3597969 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattacttcaaaccagctccaaatagttaagcaaaaaca 3598068  T
Q  201 ttgaatatgaatat 214  Q
    ||||||||||||||    
T  3598069 ttgaatatgaatat 3598082  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 27962549 - 27962602
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  27962549 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 27962602  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 27962625 - 27962677
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| |||||||    
T  27962625 aagcatatattttggagttatgctaactaaggctaatgcataatttaacaaaa 27962677  T

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Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2252038 - 2251888
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252038 cattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 2251939  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaa 151  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  2251938 ctgaaaaccagctctgaattatgcagaaaaccgctaggaatttgctctgaa 2251888  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2252598 - 2252444
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||    
T  2252598 cattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctatgttgcacaattgatgtccacaaa 2252499  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattat 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2252498 ctgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattat 2252444  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 49233862 - 49233997
Alignment:
Q  61 agtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcaga 160  Q
    |||||| ||||||  ||| ||||| | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  |||||| ||||    
T  49233862 agtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcaga 49233961  T
Q  161 aaattaccttaaaccagctccaaatagttaagcaca 196  Q
    |||||||||| |||||||||  ||||||||||||||    
T  49233962 aaattaccttgaaccagctctgaatagttaagcaca 49233997  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 49234475 - 49234569
Alignment:
Q  103 gaaaaccagctctgaattatgca-gaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    ||||||||||||| ||||||||| ||||| ||||  || || ||||  |||||| || ||||||||||| |||||||||  |||| |||||||||    
T  49234475 gaaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaataattaagcaca 49234569  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 24455940 - 24455801
Alignment:
Q  57 ctgcagtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattatt 156  Q
    ||||| |||| ||||||  ||||||||  | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  ||||||     
T  24455940 ctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatg 24455841  T
Q  157 cagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    |||||||||||||| |||||||||  ||||||||||||||    
T  24455840 cagaaaattaccttgaaccagctctgaatagttaagcaca 24455801  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 24455766 - 24455714
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| || |||| |||| ||||||||| ||| |||||||||||    
T  24455766 aagcatatattttggagctatgctaactaaggctaatgcataattcaacaaaa 24455714  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 4357001 - 4356940
Alignment:
Q  232 aagcatatattttgaagt--tatggtaacaaaggctaatacattattcaacaaaattatatt 291  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||    
T  4357001 aagcatatattttggagtgttatggtaacaaaggctaatacattattcaacaaaaatatatt 4356940  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 50862573 - 50862480
Alignment:
Q  103 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    ||||| ||||||| |||||||||||||| ||||  || || ||||  |||||| ||||||| |||||| |||||||||  ||||| ||||||||    
T  50862573 gaaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcaca 50862480  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 25433786 - 25433734
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| |||||||    
T  25433786 aagcatatattttggagttatgttaactaaggctaatgcataatttaacaaaa 25433734  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 43227998 - 43227946
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| |||||||||||    
T  43227998 aagcatatattttggagttatgctaaccaaggctaatgcataattcaacaaaa 43227946  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 43228130 - 43228035
Alignment:
Q  103 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaa 198  Q
    |||| ||| |||| |||||||||||||| ||||  || ||  |||  |||||| |||||||||||||| ||||| |||  ||||||||||||||||    
T  43228130 gaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaa 43228035  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 14839141 - 14839088
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  14839141 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 14839088  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 14839065 - 14839013
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| |||||||    
T  14839065 aagcatatattttggagttatgctaactaaggctaatgcataatttaacaaaa 14839013  T

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