View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7819_high_10 (Length: 229)
Name: NF7819_high_10
Description: NF7819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7819_high_10 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: scaffold0100 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 48909 - 48690
Alignment:
| Q |
10 |
atgtgtagtatagaacttcatcactaccgttggagtatctatatattggcctagctttttccattctcaacgttcaaaatatgtttctattttatataat |
109 |
Q |
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| T |
48909 |
atgtgtagtatagaacttcatcactaccgttggagtatctatatattggcctagcttttgccattctcaacgttcaaaatatgtttctattttatataat |
48810 |
T |
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| Q |
110 |
gaaaatttaaaccttgagagagtggtatagaagtagaatgtattgcaaatgtaagtggacaccttatatcaccaatgaatctatctatattatatgattg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48809 |
gaaaatttaaaccttgagagagtggtatagaagtagaatgtattgcaaatgtaagtggacaccttatatcaccaatgaatctatctatattatatgattg |
48710 |
T |
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| Q |
210 |
tcaaaaaattaatctatatt |
229 |
Q |
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|||||||||||||||||||| |
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| T |
48709 |
tcaaaaaattaatctatatt |
48690 |
T |
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